PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_44AA5642C.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 530aa    MW: 57501.9 Da    PI: 10.0385
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_44AA5642C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.24.3e-30213309191
                            EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            f+kv tpsdv+k++rlv+pk++ae++    +  +e++  l +ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++
  Traes_6AL_44AA5642C.1 213 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldSAANEKGLLLNFEDSAGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFSR 300
                            89***************************955556888*************************************************6 PP

                            -.SS.SEE. CS
                     B3  85 d.gr.sefe 91 
                              g+  + +
  Traes_6AL_44AA5642C.1 301 GaGEaARHR 309
                            534444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-40206319IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.41E-29210318IPR015300DNA-binding pseudobarrel domain
CDDcd100172.24E-24211300No hitNo description
PROSITE profilePS5086314.551213316IPR003340B3 DNA binding domain
PfamPF023621.8E-27213316IPR003340B3 DNA binding domain
SMARTSM010194.7E-21213314IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
NFLGEKTTHT RIHRWIPSLV VPNLHAIALL QPQCLFSSTR PSCWSRQKPA RGNKKKDPGL  60
LLSRSDPNNH WAARQRRKLF CSCLLLLKIW SSSSPLPVGE SGCRSNPREE VSKHTYMEFT  120
ATSSRFSKGE EEVEEEQEEA SMPREIPFMT AAVATSAAAP SASASASTPA SAAVSASPAG  180
SSPPFRSGDD AGASGSGGGG GGVAEAVEKE HMFDKVVTPS DVGKLNRLVI PKQYAEKYFP  240
LDSAANEKGL LLNFEDSAGK PWRFRYSYWN SSQSYVMTKG WSRFVKEKRL DAGDTVSFSR  300
GAGEAARHRL FIDWKRRADT RDPLRLPRLP LPMPLTSHYS PWGLGAGGRG FFMPPSPPAT  360
LYEHRLRQGF DFRGMNPSYP TMGRQVILFG SAARMPPHTP APLLVPRPPP PLHFTVQQQG  420
SGAGVSVTAG SPVVLDSVPV IESPTTATKK RVRLFGVNLD NPQHPGDGGD ESSNYGSALP  480
LQMPASAWRP RDHTLRLLEF PSHGAGAEAS SPSSSSSSKR EAHSGLDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-592083173113B3 domain-containing transcription factor NGA1
5os9_B3e-592083173113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankKJ8320750.0KJ832075.1 Oryza sativa Indica Group cultivar Nagina 22 B3 transcription factor ngatha 3 (NGA3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155376.10.0B3 domain-containing protein Os02g0683500-like
SwissprotQ6EU301e-153Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A3B6NQM70.0A0A3B6NQM7_WHEAT; Uncharacterized protein
TrEMBLA0A446VJQ40.0A0A446VJQ4_TRITD; Uncharacterized protein
STRINGTraes_6AL_44AA5642C.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-56B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]