PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_47F6C4665.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 440aa    MW: 46708.6 Da    PI: 7.7487
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_47F6C4665.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA602.9e-19357391135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            Cs+Cg+ kTp+WR gp+g ktLCnaCG+++++ +l
  Traes_6AL_47F6C4665.1 357 CSHCGVQKTPQWRAGPEGAKTLCNACGVRFKSGRL 391
                            *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.084351387IPR000679Zinc finger, GATA-type
SMARTSM004016.3E-18351405IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-13354414No hitNo description
Gene3DG3DSA:3.30.50.103.0E-15355389IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.41E-13356398No hitNo description
PfamPF003203.4E-17357391IPR000679Zinc finger, GATA-type
PROSITE patternPS003440357382IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MEWSNVIEGE QSGRKREGGK QRNSAFVADT DFGSHSMTHQ TLISSAPAAA AFSSAPHLLH  60
ASLPTLSPSS SPAASAMSSS SFAHHHGSLQ VERMSALRSS LRPCEAAEEV AAAVVAGPAA  120
WGAGLLGDGF SVEELLDLEE LCEVDKDGGF LCETAPAAEE EEKCSDSHGS SAVSYELMPL  180
IPPEMDLPAH DAEELEWVSR IMDDSQAELP PPAQLPAPAA WPPQHRRPQE SAVPAVDPMR  240
TPTICALSTE ALVPVRSKKR SKRSRGTTVW SLSGASISDS ASSSATSSSC SSSASLSSFF  300
LMDSPTFNLL DEPPRTKSKN KKSKHKLKKR GRKPKSHLPP QLSGGAASPP AQGDRRCSHC  360
GVQKTPQWRA GPEGAKTLCN ACGVRFKSGR LLPEYRPACS PTFVGNLHSN SHRKVLEMRR  420
KKDPVPVAIE AAAAPAVASF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659070.0AK365907.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038N10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199372.10.0GATA transcription factor 5-like
TrEMBLA0A3B6NS590.0A0A3B6NS59_WHEAT; Uncharacterized protein
TrEMBLA0A446VI330.0A0A446VI33_TRITD; Uncharacterized protein
STRINGTraes_6AL_47F6C4665.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-38GATA transcription factor 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]