PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_5C48AC7D7.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 853aa    MW: 96929.7 Da    PI: 6.4323
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_5C48AC7D7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.41.3e-19241325191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                            ++Yn+YA ++GF v++ +++k+       + ++ C+++ k +  ++   +++r++++ ++t+C+ak+ vk+  +g+w+++ +++eHnH
  Traes_6AL_5C48AC7D7.1 241 EYYNTYALQTGFVVVRGRNYKR------QRFQLDCNRNRKVKLVEDLnLKRKRKKNVIEKTNCQAKIIVKLI-KGEWVIAAVQNEHNH 321
                            69*******************9......4677******9988755543799999******************.9************** PP

                   FAR1  88 elap 91 
                            +l+p
  Traes_6AL_5C48AC7D7.1 322 PLSP 325
                            *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-18241325IPR004330FAR1 DNA binding domain
PfamPF105516.6E-29447537IPR018289MULE transposase domain
PROSITE profilePS509668.939728765IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    Send to blast
MEEYLAAYTA KEDPVTPAQP TVQTASALPA RAAGGHAQQA PAAAAAPPTS SRVVAKSTNN  60
SSAKTPGSSA NKRVIYIVAG DDGSHVPILR KVQVYGEEAS KGYEKTPAPA CNVVKQARLD  120
AGKQPVRRPR IQLLSHNREE RSAELMDDDE EAAIALSVKL ERNASYVDRS LQLVTAEEHD  180
VMEIDDISSD DTGSQSDSDS SSGSESEKEE GRFFYPAPEA LGTVKAPQVG MKFPTLEDAH  240
EYYNTYALQT GFVVVRGRNY KRQRFQLDCN RNRKVKLVED LNLKRKRKKN VIEKTNCQAK  300
IIVKLIKGEW VIAAVQNEHN HPLSPSRSFT RFLTSQKHMS PEERSFSRVL QQSRVPPGEI  360
LKILRRMSGF FRELPSKEKQ ALILQSAEQW RKANLDVEKT LNHFEQLQLQ DPCFFYTVQK  420
DEDGTLRSIF WTDARSRMDY EIFGDFVSFD TTFSTNRHNM PFVPITGMNS RGRTIVLGCA  480
LLQDRKAETY KWMLETFLQE MGGGQIPRSV ITSQDEAMAK AIAEVMPQAR HRFCRWNGKA  540
QEKMAAFVAA RGNMKAELDI LVDSSLTETE FEQGWSALIQ RHDASENEYL QLLWEMRKTW  600
APVYFMQDFF PFVVSARGSQ GAFSLFKENV LPKDKIENLI EKYEEMQDKI KKTDEEDVLE  660
AATEPSCFSL QPIERHASRV YTRQIFLKVQ KELLHSTAFK VQEIERGTLY RLDKAYSYEN  720
PEYDRDSFEV SIEPGLTDTY TCQCAKFARD GILCCHVFRL FTQFGIDEIP EKYIVARWTD  780
GFREEQLERR EEGRLVVAAQ REEDAARYAA LMSKAAGIGR EICGDGAKCD AFMLELDRIR  840
EKMATMAMAN DHV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282289LKRKRKKN
2284288RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146870.10.0protein FAR1-RELATED SEQUENCE 7-like
TrEMBLA0A446VUQ20.0A0A446VUQ2_TRITD; Uncharacterized protein
STRINGTraes_6AL_5C48AC7D7.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-76FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]