PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6AL_6B7CBC837.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

TCP

Protein Properties

Length: 203aa MW: 21385.1 Da PI: 9.9666

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6AL_6B7CBC837.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.7	1e-34	47	138	8	102
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg..... 88 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tgt++++a ++ +a s sss+ + Traes_6AL_6B7CBC837.1 47 VKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGTGTTPAAFVssSAPSTSSSS-----Sfsyph 129 59********************************************************9999966632111111111.....111222 PP TCP 89 ....kaaksaakskksqk 102 k ++++ Traes_6AL_6B7CBC837.1 130 tllgK---------RPRE 138 33331.........2222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.3E-32	47	141	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.428	47	101	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MTSHDIAAAS SPFHVYQQHL PMTMAPAAAS ADAGLAPAAS KKAGGSVKDR HSKVNGRGRR 60 VRMPIVCAAR VFQLTRELGL KSDGQTIEWL LRQAEPSILA ATGTGTTPAA FVSSSAPSTS 120 SSSSFSYPHT LLGKRPREEE NDAFGAGAAT SAFWAALQAP PRQDTWGFSP LDAQAAYMPM 180 AQVHHHHLNL VAALSGAARR AEE

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00643	PBM	Transfer from BGIOSGA008683	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020146556.1	1e-123	transcription factor TCP7-like
Swissprot	Q9FMX2	3e-39	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A3B6NRF1	1e-145	A0A3B6NRF1_WHEAT; Uncharacterized protein
TrEMBL	A0A446VHP5	1e-145	A0A446VHP5_TRITD; Uncharacterized protein
STRING	Traes_6AL_6B7CBC837.1	1e-146	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	3e-29	TCP family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]