PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_6FF2ED257.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 147aa    MW: 16594 Da    PI: 6.0029
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_6FF2ED257.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.23.1e-13611381289
                            HTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
                     B3  12 ksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                            ++ rl lp +  ++              ++l+d+  r W v +    +s  + +t+GWk+Fv an+L++gD +v+ +d + +e
  Traes_6AL_6FF2ED257.1  61 TQTRLELPDPLSNAVgrkgR---LDRNIVMLKDPMKRLWPVFY--HETSLFVGFTGGWKSFVAANKLEAGDLCVLLMDLDeDE 138
                            45568888888766654322...233479999***********..******************************97755233 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.20950147IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-1455137IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-1455136IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.4E-555144IPR003340B3 DNA binding domain
PfamPF023628.1E-1161137IPR003340B3 DNA binding domain
CDDcd100173.99E-1264147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MSANRAVAHQ TEHHFFRQED AKSSNPAPPV PLLPVKVEVS ELDDHRPVLK ASLQFVVPST  60
TQTRLELPDP LSNAVGRKGR LDRNIVMLKD PMKRLWPVFY HETSLFVGFT GGWKSFVAAN  120
KLEAGDLCVL LMDLDEDELV YDVEITR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196102.11e-84B3 domain-containing protein Os02g0598200-like
RefseqXP_020196103.11e-84B3 domain-containing protein Os02g0598200-like
SwissprotQ6K5K21e-46Y2982_ORYSJ; B3 domain-containing protein Os02g0598200
TrEMBLA0A3B6NQI35e-98A0A3B6NQI3_WHEAT; Uncharacterized protein
TrEMBLA0A446VFJ25e-98A0A446VFJ2_TRITD; Uncharacterized protein
STRINGTraes_6AL_6FF2ED257.11e-105(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122722730
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]