PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_7A4395C60.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 216aa    MW: 22625.2 Da    PI: 10.2745
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_7A4395C60.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.64.4e-1564145286
               trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                            W++  + +Li+a  e+  +l+rg+l+ p+W+ev++++ ++ g+++   s +qCk++++ l+k+yk +k+ + +       ++p+fd+l
  Traes_6AL_7A4395C60.2  64 WSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYSKppkSDVQCKNRIDTLKKKYKVEKAKSDS-------SWPFFDRL 144
                            *************************************87889976333778***************9998886.......5*****99 PP

               trihelix  86 e 86 
                            +
  Traes_6AL_7A4395C60.2 145 D 145
                            7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.7E-2462146No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDDDGAASPS PSPSPSRSPS PLPVADPVTV AAVPPGHLAL AIPIHKHGPS SSGGGGGGGR  60
EDAWSDGATS TLIDAWGERF VALGRGSLRH PQWQEVAEVV SSRDGYSKPP KSDVQCKNRI  120
DTLKKKYKVE KAKSDSSWPF FDRLDFLLAP VQKLLGNSGG AAGNFGSSNP SNRSTAPMAP  180
RVNFPQRTRT AFPSIGMKRR LPSPPQASAS SESSDG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3632020.0AK363202.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013H02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172601.11e-150trihelix transcription factor ASIL1-like
TrEMBLA0A446VEB01e-153A0A446VEB0_TRITD; Uncharacterized protein
STRINGTraes_6AL_7A4395C60.21e-153(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-34sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]