PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_9437F730F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 191aa    MW: 20696.3 Da    PI: 7.9964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_9437F730F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.25.9e-13127172655
                            HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +++Er RR ri +++ +L++l+P+     +k  s +++L +Ave+Ik Lq
  Traes_6AL_9437F730F.1 127 SIAERERRTRISDKLRKLQDLVPNM----DKQTSTSDMLDLAVEHIKGLQ 172
                            689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.361121171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-16124184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.85E-13125176No hitNo description
Gene3DG3DSA:4.10.280.104.3E-15126184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-10127172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-13127177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MKSQLSFTAG GPQIAAHLSR ISEGASLFPG ADVVRTAAHP GGEHPVSRSF SASGSSGGFS  60
IVGPWDESRE IIGTLDLGGY ESQFSGMASS SSLELAGMDK YMQAQQQEDQ VAFKVRAKRG  120
CATHPRSIAE RERRTRISDK LRKLQDLVPN MDKQTSTSDM LDLAVEHIKG LQSQLQAMKH  180
EQDKCTCCNK P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2499540.0AK249954.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf51f14, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165844.11e-111transcription factor bHLH128-like
SwissprotQ8H1026e-46BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A446VFW21e-138A0A446VFW2_TRITD; Uncharacterized protein
TrEMBLT1MFB71e-139T1MFB7_TRIUA; Uncharacterized protein
STRINGTraes_6AL_9437F730F.11e-140(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-45bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]