PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_9C9D677D4.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARR-B
Protein Properties Length: 676aa    MW: 72702.6 Da    PI: 6.611
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_9C9D677D4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.82.1e-27212265155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            +pr++W+ eLH++Fv a+++L G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  Traes_6AL_9C9D677D4.1 212 RPRVVWSVELHRKFVAALNHL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 265
                            59*******************.********************************8 PP
2Response_reg76.97.5e-26231311109
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                            vl vdD+p+ +++l+++l++ +y +v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++
  Traes_6AL_9C9D677D4.1  23 VLAVDDDPVCLKVLETLLRRCQY-HVTATNQAVIALRMLRENRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTV 108
                            799********************.***************99999********************87754.558*************** PP

                            HHHHHTTESEEEESS--HHHHHH CS
           Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                             + +  Ga d+l Kp+ +eel++
  Traes_6AL_9C9D677D4.1 109 MKGITHGACDYLLKPVRIEELRN 131
                            *********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.8E-1881676IPR017053Response regulator B-type, plant
SuperFamilySSF521722.85E-3420147IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.6E-4120175No hitNo description
SMARTSM004485.8E-3021133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.75322137IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.6E-2323132IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.04E-2624136No hitNo description
PROSITE profilePS5129410.994209268IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-28210270IPR009057Homeodomain-like
SuperFamilySSF466895.02E-19210269IPR009057Homeodomain-like
TIGRFAMsTIGR015576.4E-25213265IPR006447Myb domain, plants
PfamPF002492.0E-5214264IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MRTDVRRGAA ATGRDQFPVG MRVLAVDDDP VCLKVLETLL RRCQYHVTAT NQAVIALRML  60
RENRDMFDLV ISDVHMPDMD GFKLLELVGL EMDLPVIMLS VNGETKTVMK GITHGACDYL  120
LKPVRIEELR NIWQHVVRRK FSTRDSVNLD TYEECNKPPS ADSDYVFGQV TCGSPDQSGR  180
PSKKRKEYHS EEEDEDEDSS GQDNDDPSAP KRPRVVWSVE LHRKFVAALN HLGIDKAVPK  240
RILELMNVEK LTRENVASHL QKYRLYLRRL SAVASQQAGI VAALGGRDPF LRMDAFEGLQ  300
GYQAFTSPAA LSTFSAHGLL NSPRNNQTAV VIQGVATSRS IPTGSSSCTT NPLIGDAAKY  360
HLSLPGNQHG NLGQGLATSL GQAQLQQKWM NEGSGDLSTI LSGNSRANGM PRMLPSVTSS  420
PLLPPDLVEC TQAKVAIQPS VRAPSASVEL LEGAIGASSG PLESRVSQQS ALPSSGFSAN  480
MLPVHGSFSN NGASFSSNGA TRLGDAFSAS FRPTNDLTVA RGTKVGAGSF GGTIHLSPDT  540
EQKYVSFGSS DSLLDPKLVW SSSQLPSNIG AHYHSMSQRS NNCSIDSSHG GRMFGQTSAS  600
ASTAAPQTKF DILFSGDTSM ARNASESGAQ RLQSELSSST CSFDGLLNSM IKVEKDDAAF  660
GGDDLGCDFY SLGACI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-25208271164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3758490.0AK375849.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3107L06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170131.10.0two-component response regulator ORR23-like
SwissprotB8AEH10.0ORR23_ORYSI; Two-component response regulator ORR23
TrEMBLA0A3B6NWN60.0A0A3B6NWN6_WHEAT; Two-component response regulator
TrEMBLA0A446VS680.0A0A446VS68_TRITD; Two-component response regulator
STRINGTraes_6AL_9C9D677D4.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-109response regulator 12
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]