PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_AFC0B56BD.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 175aa    MW: 18451.7 Da    PI: 8.514
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_AFC0B56BD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.2e-18108159156
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                            s++ GVr+++ +g+W+AeIrdp     +   r +lg+f+ta +Aa+a++ a+++++g+
  Traes_6AL_AFC0B56BD.1 108 SKFGGVRQRS-WGKWAAEIRDP-----HraVRQWLGTFDTAVDAARAYDLAALEFRGH 159
                            7999***999.**********7.....338**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.58E-21108167IPR016177DNA-binding domain
CDDcd000188.71E-28108167No hitNo description
PfamPF008471.4E-10108159IPR001471AP2/ERF domain
PROSITE profilePS5103222.537109166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-29109167IPR001471AP2/ERF domain
SMARTSM003801.1E-31109172IPR001471AP2/ERF domain
PRINTSPR003672.8E-11110121IPR001471AP2/ERF domain
PRINTSPR003672.8E-11148168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MAPRLERGGR GFQLPNSELE DSLFLRALIS VVNGDAVVPT LHLEPSSTPH FAAAVPACAS  60
CGVDGCIGCM FVAAAATADS SSGGEECSAA SFVKDGGVGK ITRRRSRSKF GGVRQRSWGK  120
WAAEIRDPHR AVRQWLGTFD TAVDAARAYD LAALEFRGHR ARLNFPDAAA SSSSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-17110166663ATERF1
3gcc_A2e-17110166663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3719431e-178AK371943.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143L06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193074.11e-107ethylene-responsive transcription factor ERF109-like
TrEMBLA0A3B6NSN91e-123A0A3B6NSN9_WHEAT; Uncharacterized protein
STRINGTraes_6AL_AFC0B56BD.11e-123(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.12e-20ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]