PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6AL_BA6465E82.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 203aa MW: 22818.2 Da PI: 6.4346

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6AL_BA6465E82.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.8e-05	10	35	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp Cg++F++ s L+ H r H Traes_6AL_BA6465E82.1 10 HMCPypECGRRFTQESKLRAHFRAqH 35 689999***************99877 PP
2	zf-C2H2	13.1	0.0003	76	101	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp C k + + + L+ H+++ H Traes_6AL_BA6465E82.1 76 YVCPydGCAKAYIHEYKLNLHLKKeH 101 9**********************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.72E-6	1	36	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.9E-8	10	32	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0077	10	35	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.032	10	35	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	12	35	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.3E-8	68	98	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.69E-5	71	99	No hit	No description
SMART	SM00355	0.012	76	101	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.871	76	106	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	78	101	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MKTHFADNYH MCPYPECGRR FTQESKLRAH FRAQHEKSGL QNPGGPVINR NALGDHPHNT 60 AKSLVTPPVP SADRPYVCPY DGCAKAYIHE YKLNLHLKKE HPNHYSDAGA QAGPSRGTIL 120 KNSRRSKPNL TTSMPLAKIP KRSGYTVPSP AVSIPEEHQW PRKVLYEDDS EETEEEGDNL 180 EEVGLRYRAA SGGDDDEETE EEE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK356960	1e-112	AK356960.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1042P17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020149431.1	1e-124	uncharacterized zinc finger protein At4g06634 isoform X1
TrEMBL	A0A3B6NR40	1e-147	A0A3B6NR40_WHEAT; Uncharacterized protein
TrEMBL	A0A446VED6	1e-147	A0A446VED6_TRITD; Uncharacterized protein
TrEMBL	A0A446VEE6	1e-149	A0A446VEE6_TRITD; Uncharacterized protein
STRING	Traes_6AL_BA6465E82.1	1e-151	(Triticum aestivum)
STRING	Traes_6AL_BA6465E821.1	1e-151	(Triticum aestivum)
STRING	Traes_6AL_BA6465E822.1	1e-151	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2094	38	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	1e-30	C2H2 family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]