PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6AL_BF34EBCFA.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

DBB

Protein Properties

Length: 205aa MW: 22432.1 Da PI: 4.9806

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6AL_BF34EBCFA.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.2	3e-07	4	35	5	36
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C+ ++e++ +++C+++ lC +C + H+ Traes_6AL_BF34EBCFA.2 4 LCDFCGEQRPTIYCRSDAASLCLSCDRNVHSA 35 6***************************9965 PP
2	zf-B_box	24.9	4.1e-08	47	78	5	36
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C+++ ++++ C + ++ lC++C ++H Traes_6AL_BF34EBCFA.2 47 LCDRCASQPAAVRCLEENTSLCQNCDWSGHAA 78 7*****************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	1.9E-10	1	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.769	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	3.76E-5	4	35	No hit	No description
PROSITE profile	PS50119	8.788	43	90	IPR000315	B-box-type zinc finger
CDD	cd00021	1.68E-4	47	78	No hit	No description
SMART	SM00336	0.55	48	90	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MGALCDFCGE QRPTIYCRSD AASLCLSCDR NVHSANTLSQ RHMRTLLCDR CASQPAAVRC 60 LEENTSLCQN CDWSGHAATS MAAVHLRQTI NCYSGCPSSE ELARIWSFDF DAPSAAAEPN 120 CEEGISMMSI NDSGVSNHCG VQQDCSLLDI ANSSLMSDPP TSEKLKSEDE MNLQPLPTHQ 180 PAQSVSMAPK FPSIQRNCQF QHHQI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK252666	0.0	AK252666.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf169b05, mRNA sequence.
GenBank	JQ791244	0.0	JQ791244.1 UNVERIFIED: Hordeum vulgare subsp. vulgare cultivar OWB-D N gene, partial sequence.
GenBank	JQ791245	0.0	JQ791245.1 UNVERIFIED: Hordeum vulgare subsp. vulgare cultivar OWB-R N gene, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020173272.1	1e-133	zinc finger protein CONSTANS-LIKE 10-like isoform X1
Refseq	XP_020173273.1	1e-133	zinc finger protein CONSTANS-LIKE 10-like isoform X2
Swissprot	Q9LUA9	4e-59	COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBL	A0A446VM15	1e-139	A0A446VM15_TRITD; Uncharacterized protein
STRING	Traes_6AL_BF34EBCFA.2	1e-150	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2079	37	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	2e-61	B-box type zinc finger protein with CCT domain

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]