PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6AL_C0E74F959.2

Common Name

NFYA-A1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YA

Protein Properties

Length: 254aa MW: 27524.8 Da PI: 10.4265

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6AL_C0E74F959.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.8	7.5e-33	98	154	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep++VN+KQy++Il+RRq Rakle+++kl +k+rkpylheSRh hA++R+RgsgGrF Traes_6AL_C0E74F959.2 98 DEPIFVNPKQYNGILRRRQLRAKLEAQNKL-TKNRKPYLHESRHLHAMKRARGSGGRF 154 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.6E-37	96	157	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.727	97	157	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	9.2E-29	99	154	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.9E-22	100	122	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.9E-22	131	154	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MLLPSSSSSA YDPKGDSFGK SVDDHMRSTL TFGDKHSVYA GQNTDYGHPM ACISYPFNDS 60 GSGVWAAYGS RAMFQPLMAG GGASATARVP LPVELAADEP IFVNPKQYNG ILRRRQLRAK 120 LEAQNKLTKN RKPYLHESRH LHAMKRARGS GGRFLNSKQL KQQQQSGSAC TKAIADGANS 180 LGSTHLRLGS GAAGDRTNSV SKAMSSQENS KRVAAPAPAF TMIQAARKDD DFFHHHAHHL 240 SFSGHFGQSS DRYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-20	98	159	2	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM078746	0.0	KM078746.1 Triticum aestivum CCAAT-binding transcription factor B (NFYA-A1) mRNA, complete cds.
GenBank	KM983028	0.0	KM983028.1 Thinopyrum ponticum x Triticum aestivum NF-YA10-1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020156071.1	1e-159	nuclear transcription factor Y subunit A-4-like isoform X1
TrEMBL	A0A0A7HG52	0.0	A0A0A7HG52_9POAL; NF-YA10-1
TrEMBL	A0A446VQF8	0.0	A0A446VQF8_TRITD; Uncharacterized protein
TrEMBL	W5GA07	0.0	W5GA07_WHEAT; CCAAT-binding transcription factor B
STRING	Traes_6AL_C0E74F959.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13276	28	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54160.1	3e-34	nuclear factor Y, subunit A5

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Qu B, et al. A wheat CCAAT box-binding transcription factor increases the grain yield of wheat with less fertilizer input. Plant Physiol., 2015. 167(2): p. 411-23 [PMID:25489021]