PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_DFEC1189D1.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 175aa    MW: 18889.2 Da    PI: 10.5083
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_DFEC1189D1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-173484256
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                            +y+GVr+++ +gr++AeIrdp     + +r +lg+++tae+Aa a++ a++ ++g+
  Traes_6AL_DFEC1189D1.1 34 QYRGVRRRP-WGRFAAEIRDPA----SkARRWLGTYDTAEQAACAYDVAARFMRGA 84
                            59*******.**********83....259************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-213492IPR016177DNA-binding domain
CDDcd000184.20E-273492No hitNo description
Gene3DG3DSA:3.30.730.101.5E-303491IPR001471AP2/ERF domain
PROSITE profilePS5103222.7343491IPR001471AP2/ERF domain
SMARTSM003801.3E-313497IPR001471AP2/ERF domain
PRINTSPR003672.1E-93546IPR001471AP2/ERF domain
PfamPF008473.4E-113583IPR001471AP2/ERF domain
PRINTSPR003672.1E-95773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MDVDAAAQTH AHAHRHRSKR SSLASGDVSP TGMQYRGVRR RPWGRFAAEI RDPASKARRW  60
LGTYDTAEQA ACAYDVAARF MRGAKARTNF PAPVDSWPAG YWPWGQSTAQ AHPPAQLNTF  120
ILHNLMSSSP HGCVLLHHAG HGHSHVNPPP PPIPTPPSPR PAASCAATVT ISDTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-223296368ATERF1
3gcc_A8e-223296368ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for correct embryo patterning and cotyledon organogenesis. May regulate positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Involved in the cytokinin signaling pathway that promotes shoot regeneration, probably through transcriptional activation of target genes such as CUC1. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16339853, ECO:0000269|PubMed:17056621, ECO:0000269|PubMed:17376809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173039.11e-121ethylene-responsive transcription factor 3-like
SwissprotQ9FYK52e-29ESR2_ARATH; Ethylene-responsive transcription factor ESR2
TrEMBLA0A3B6NQJ21e-122A0A3B6NQJ2_WHEAT; Uncharacterized protein
TrEMBLA0A446VF791e-122A0A446VF79_TRITD; Uncharacterized protein
STRINGTraes_6AL_DFEC1189D.11e-124(Triticum aestivum)
STRINGTraes_6AL_DFEC1189D1.11e-124(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-31DORNROSCHEN-like
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  3. Thoma R,Chandler JW
    Polarity in the early floral meristem of Arabidopsis.
    Plant Signal Behav, 2015. 10(4): p. e992733
    [PMID:25806573]
  4. Comelli P,Glowa D,Chandler JW,Werr W
    Founder-cell-specific transcription of the DORNRÖSCHEN-LIKE promoter and integration of the auxin response.
    J. Exp. Bot., 2016. 67(1): p. 143-55
    [PMID:26428063]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Chandler JW,Werr W
    DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  7. Durán-Medina Y,Serwatowska J,Reyes-Olalde JI,de Folter S,Marsch-Martínez N
    The AP2/ERF Transcription Factor DRNL Modulates Gynoecium Development and Affects Its Response to Cytokinin.
    Front Plant Sci, 2017. 8: p. 1841
    [PMID:29123539]