PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_F23B20CBD.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 65aa    MW: 7694.74 Da    PI: 8.4202
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_F23B20CBD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR131.94.3e-102565141
                   FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkr 41
                           +fYn YA e GFsvrks+ +    n+ i+ r+ vCs++g+r
  Traes_6AL_F23B20CBD.1 25 EFYNIYALEKGFSVRKSYVEWDGSNKYIILRKIVCSRQGFR 65
                           6**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.7E-82565IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
ASDESMFEYL NVVSKMFDSK AEGYEFYNIY ALEKGFSVRK SYVEWDGSNK YIILRKIVCS  60
RQGFR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703063e-95HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188780.15e-37protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A452XR334e-36A0A452XR33_AEGTS; Uncharacterized protein
TrEMBLA0A453DSV95e-36A0A453DSV9_AEGTS; Uncharacterized protein
STRINGTraes_6AL_F23B20CBD.13e-40(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.13e-07FAR1-related sequence 12
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]