PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6AL_F5B8C510F.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Trihelix

Protein Properties

Length: 146aa MW: 16433.5 Da PI: 9.0975

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6AL_F5B8C510F.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.9	7.1e-15	32	83	34	87
trihelix 34 vskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +k++e g++rs+k+Ckek+en+ k+y+++keg+ +r ++ +++++f++lea Traes_6AL_F5B8C510F.2 32 FCRKLAELGYRRSAKKCKEKFENVDKYYRRTKEGRAGR--QDGKNYRFFKELEA 83 567889****************************97..66678****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-10	34	84	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
ILVWITTHAI FIAAPVWLRR ESKRRPLTAT RFCRKLAELG YRRSAKKCKE KFENVDKYYR 60 RTKEGRAGRQ DGKNYRFFKE LEALHAAAPQ QNQHMATAAP ILPDPRPLAM APAYPGAGLP 120 DLSLSSNSES ESDDESDEEE DQAGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269\|PubMed:19717615, ECO:0000269\|PubMed:21169508}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by water stress. {ECO:0000269\|PubMed:21169508}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK372550	1e-157	AK372550.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3004N20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020184216.1	2e-42	trihelix transcription factor GTL1-like
Refseq	XP_020184217.1	2e-42	trihelix transcription factor GTL1-like
Swissprot	Q9C882	2e-21	GTL1_ARATH; Trihelix transcription factor GTL1
TrEMBL	M8A0H4	1e-68	M8A0H4_TRIUA; Trihelix transcription factor GT-2
STRING	Traes_6AL_F5B8C510F.2	1e-105	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	1e-23	GT-2-like 1

Publications ? help Back to Top
Caro E,Desvoyes B,Gutierrez C GTL1 keeps cell growth and nuclear ploidy under control. EMBO J., 2012. 31(24): p. 4483-5 [PMID:23188085] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Zheng X, et al. The Wheat GT Factor TaGT2L1D Negatively Regulates Drought Tolerance and Plant Development. Sci Rep, 2016. 6: p. 27042 [PMID:27245096] Shibata M, et al. GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis. Development, 2018. [PMID:29439132]