PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AL_FD17E787A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 139aa    MW: 15507.6 Da    PI: 9.2734
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AL_FD17E787A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.22.2e-185992134
                   GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                           C +C+  kTp+WR gp g+ktLCnaCG++y++ +
  Traes_6AL_FD17E787A.1 59 CMHCQIDKTPQWRAGPLGPKTLCNACGVRYKSGR 92
                           99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.8E-1553103IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.0955389IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.8E-155790IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.33E-1557116No hitNo description
CDDcd002024.22E-1458115No hitNo description
PfamPF003204.2E-165993IPR000679Zinc finger, GATA-type
PROSITE patternPS0034405984IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MFSSTSSYSE EPECIAESNS QPKKKKKAKR PTPPVTSDAE GDADYEEGSG LAPGEVRRCM  60
HCQIDKTPQW RAGPLGPKTL CNACGVRYKS GRLFPEYRPA ASPTFVPAIH SNSHKKVVEM  120
RQKVEPKGDD LLQFIRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3536491e-173AK353649.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1001M24.
GenBankAK3566851e-173AK356685.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1038B06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165199.12e-83GATA transcription factor 11-like
RefseqXP_020165203.12e-83GATA transcription factor 11-like
SwissprotO826328e-40GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A3B6NWU02e-97A0A3B6NWU0_WHEAT; Uncharacterized protein
TrEMBLA0A446VT872e-97A0A446VT87_TRITD; Uncharacterized protein
TrEMBLA0A446VT892e-97A0A446VT89_TRITD; Uncharacterized protein
TrEMBLA0A446VTB22e-98A0A446VTB2_TRITD; Uncharacterized protein
STRINGTraes_6AL_FD17E787A.11e-100(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-41GATA family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]