PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6AS_0D7F17F06.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Trihelix

Protein Properties

Length: 476aa MW: 53376.4 Da PI: 9.059

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6AS_0D7F17F06.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.4	9.4e-19	384	464	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e++ Li++r em+e++++ k ++ Wee+s + ++g++r+p qCk+ w +l ++y++ k+ e++ +t++yf+ ++ Traes_6AS_0D7F17F06.1 384 KWKPEEIKSLIQLRGEMNEKFQTVKGRMVMWEEISGSLLKQGITRTPAQCKSVWTSLLQKYEESKKDEEN-----MRTWQYFSAMD 464 7***************************************************************9998.....479****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56281	3.85E-14	20	157	IPR001279	Metallo-beta-lactamase
Pfam	PF07521	6.1E-7	100	129	IPR011108	Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profile	PS50090	8.153	377	441	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.6E-6	379	443	IPR009057	Homeodomain-like
CDD	cd12203	3.22E-20	383	448	No hit	No description
Pfam	PF13837	3.8E-16	383	465	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MMMQQSGVHN FRTFLQVKAE DMDAYDPKNL LVVTTGSQAE PRAALNLASY GGSHALKLSK 60 EDVLLYSAKV IPGNESRVMK MLNRLTDLGP KIVMGKDAGL HTSGHAYHDE LEEVLQIVKP 120 QHFLPVHGEL LFLKEHELLG RSTGIKHTTV IKNGEMLGVS HLRNRKVLSN GFVSLGKQDF 180 KLMYTDGDKA FGTSTDLCID ERFRIASDGI IFVSMEIFRP KPASPQSGLK GKFKITTRCL 240 WLDNGRLLDA LYKAAHAALS SCPLNCPLSH MERMVSEILR KMVRKYSGKR PDVIVVASEN 300 TTVGFSEEVI NRHMSLVDYE KTRPENPERE AEESIPEVMR TTPDDATTSS NAQGNKPKLG 360 KISIIDKDSS TSAPAPAKSS RKNKWKPEEI KSLIQLRGEM NEKFQTVKGR MVMWEEISGS 420 LLKQGITRTP AQCKSVWTSL LQKYEESKKD EENMRTWQYF SAMDSFLSCE GEMATK

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MMMQQSGVHN FRTFLQVKAE DMDAYDPKNL LVVTTGSQAE PRAALNLASY GGSHALKLSK  60
EDVLLYSAKV IPGNESRVMK MLNRLTDLGP KIVMGKDAGL HTSGHAYHDE LEEVLQIVKP  120
QHFLPVHGEL LFLKEHELLG RSTGIKHTTV IKNGEMLGVS HLRNRKVLSN GFVSLGKQDF  180
KLMYTDGDKA FGTSTDLCID ERFRIASDGI IFVSMEIFRP KPASPQSGLK GKFKITTRCL  240
WLDNGRLLDA LYKAAHAALS SCPLNCPLSH MERMVSEILR KMVRKYSGKR PDVIVVASEN  300
TTVGFSEEVI NRHMSLVDYE KTRPENPERE AEESIPEVMR TTPDDATTSS NAQGNKPKLG  360
KISIIDKDSS TSAPAPAKSS RKNKWKPEEI KSLIQLRGEM NEKFQTVKGR MVMWEEISGS  420
LLKQGITRTP AQCKSVWTSL LQKYEESKKD EENMRTWQYF SAMDSFLSCE GEMATK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5a0t_A	2e-19	15	299	288	560	RIBONUCLEASE J
5a0t_B	2e-19	15	299	288	560	RIBONUCLEASE J
5a0v_A	2e-19	15	299	288	560	RIBONUCLEASE J
5a0v_B	2e-19	15	299	288	560	RIBONUCLEASE J
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Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250\|UniProtKB:Q72JJ7, ECO:0000269\|PubMed:15266054, ECO:0000269\|PubMed:22033332, ECO:0000269\|PubMed:25871650}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:25871650}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249612	0.0	AK249612.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf47b03, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020191368.1	0.0	uncharacterized protein LOC109777127
Swissprot	Q84W56	1e-153	RNJ_ARATH; Ribonuclease J
TrEMBL	A0A446VDT0	0.0	A0A446VDT0_TRITD; Uncharacterized protein
STRING	Traes_6AS_0D7F17F06.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4996	35	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	1e-155	Trihelix family protein

Publications ? help Back to Top
Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. Plant Physiol., 2011. 155(4): p. 1678-89 [PMID:21139083] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Halpert M,Liveanu V,Glaser F,Schuster G The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities. Plant Mol. Biol., 2019. 99(1-2): p. 17-29 [PMID:30511330]