PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_43EFBAAD5.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 101aa    MW: 12055.1 Da    PI: 10.4527
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_43EFBAAD5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding346.7e-113265136
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36
                           r +WT eE+  l++a++ +G++ W+ Ia+ ++ +R 
  Traes_6AS_43EFBAAD5.1 32 REAWTIEEEHALINAHRVYGNR-WAEIAKVLP-RRN 65
                           789*******************.*********.775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.41E-101766IPR009057Homeodomain-like
PROSITE profilePS5129412.0472779IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-102966IPR009057Homeodomain-like
SMARTSM007173.3E-43177IPR001005SANT/Myb domain
PfamPF002492.8E-93265IPR001005SANT/Myb domain
CDDcd001671.76E-53467No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MLMGWVCIQC SMDQQNGLIA RWTYRQEMSR EREAWTIEEE HALINAHRVY GNRWAEIAKV  60
LPRRNRVLLF VLRFFSPIAK VKDDKTKWII GVTRYTKSSV I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703065e-42HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165766.13e-44myb-related protein B-like
TrEMBLA0A446JLX02e-69A0A446JLX0_TRITD; Uncharacterized protein
STRINGTraes_6AS_43EFBAAD5.14e-70(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.25e-11myb domain protein 3r-5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]