PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_448C7608C.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 870aa    MW: 97711.9 Da    PI: 7.349
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_448C7608C.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.3e-06557579123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C+ Cg +F+ + +Lk+H+++H
  Traes_6AS_448C7608C.2 557 HTCEECGACFRKPAHLKQHMQSH 579
                            79*******************99 PP
2zf-C2H220.71.1e-06585609123
                            EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                            + Cp  dC+ s+ rk++L+rH+ tH
  Traes_6AS_448C7608C.2 585 FACPleDCPFSYIRKDHLNRHMLTH 609
                            78**********************9 PP
3zf-C2H215.84.1e-05614639123
                            EEET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                            ++Cp   Cgk+Fs k n +rH +  H
  Traes_6AS_448C7608C.2 614 FTCPlgGCGKRFSIKANIQRHVKEmH 639
                            89********************9988 PP
4zf-C2H215.45.5e-05658680323
                            ET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                            C+   C+k F+ +s+Lk+H  +H
  Traes_6AS_448C7608C.2 658 CQeeGCKKAFKYPSQLKKHEESH 680
                            77779**************9988 PP
5zf-C2H215.26.1e-05747771223
                            EET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                            kC+   C  sFs+ksnL++H++  H
  Traes_6AS_448C7608C.2 747 KCSfdGCECSFSTKSNLNKHMKAcH 771
                            799999****************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513755.4813565IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.50666100IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.7E-666100IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513759.164136170IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.3E-5141163IPR002885Pentatricopeptide repeat
PfamPF015352.7E-5141164IPR002885Pentatricopeptide repeat
PfamPF015350.0035169196IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.7E-6181182IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513759.843198232IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.1E-4200233IPR002885Pentatricopeptide repeat
PfamPF015354.1E-4200229IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.859268298IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.7E-6271330IPR011990Tetratricopeptide-like helical domain
PfamPF015350.0059273294IPR002885Pentatricopeptide repeat
PfamPF130417.1E-11298346IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.233299333IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.2E-8301335IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.824334364IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.138370400IPR002885Pentatricopeptide repeat
PfamPF015350.4373397IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.7E-6400465IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.327402432IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.95436470IPR002885Pentatricopeptide repeat
SMARTSM0035542511534IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.277557584IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.3E-5557576IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0053557579IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280559579IPR007087Zinc finger, C2H2
SuperFamilySSF576675.79E-11570611No hitNo description
Gene3DG3DSA:3.30.160.601.6E-12577611IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.4E-4585609IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.515585614IPR007087Zinc finger, C2H2
PROSITE patternPS000280587609IPR007087Zinc finger, C2H2
SuperFamilySSF576671.1E-8595646No hitNo description
Gene3DG3DSA:3.30.160.603.5E-5612636IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.217614644IPR007087Zinc finger, C2H2
SMARTSM003553.2E-4614639IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280616639IPR007087Zinc finger, C2H2
PROSITE profilePS501579.245656681IPR007087Zinc finger, C2H2
SMARTSM003550.039656680IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.6E-6658680IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280658680IPR007087Zinc finger, C2H2
SMARTSM003555688713IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280690713IPR007087Zinc finger, C2H2
SMARTSM0035532716737IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.15E-8731788No hitNo description
Gene3DG3DSA:3.30.160.605.5E-6731768IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.198746776IPR007087Zinc finger, C2H2
SMARTSM003550.0016746771IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280748771IPR007087Zinc finger, C2H2
PROSITE profilePS501578.642777803IPR007087Zinc finger, C2H2
SMARTSM003552.2777803IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280779803IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MNRSVCHHLL AQCRSLRELE RIHARAVTHG LHPCNQSISC KLFRCYADFG RPAEARRLFG  60
EIPCPDLVSF TSLMSLHLQL NQHHEAMFTF SRAIASGHRP DGFVVVGALS ASGGAGDLCA  120
GLGVHGLIFR CGLGSELVVG NALVDMYCRC GRFEGALGVF DEMAVKDEVT WGSMLHGYMK  180
CVGVDSALSF FDRMPVKSMV SWTALVTGHV QAKQPIRALE IFGRMVLEGH RPTHVTIVGV  240
LSACADIGSL DLGRVIHGYG SKFNISTNII VSNALMDMYA KSGSIEMAFA VFEEVPLKDA  300
FTWTTMISSF TVQGDGIKAL ELFEDMLRSG IVPNSVTFVS VLSACSHAGL IQQGRELFDK  360
MRRIYNIKPQ LEHYGCIVDL LGRGGLLEEA EALIYDMDVE PDTVIWRSLL SACLVHGNDR  420
LAEIAGQEII KREPGDDGVY VLLWNIYASS DRWKQALDIR KQMLTRKIFK KPGCSWIEVD  480
GGVHEFLMSS GDGIDGDEKS EEAHGKDIRR IKCEFCTVVR SKMYLIRAHM VAQHKDELDA  540
SEIYDSNGEK VVYGVGHTCE ECGACFRKPA HLKQHMQSHS KERSFACPLE DCPFSYIRKD  600
HLNRHMLTHE GKLFTCPLGG CGKRFSIKAN IQRHVKEMHE DEHECKIDDT KSNQQVICQE  660
EGCKKAFKYP SQLKKHEESH AKLDYVEVVC CEPGCLKTFT NAKCLRAHNQ SCHLYTHCDI  720
CGEKHLRKNI KRHLRAHDEV HSTERLKCSF DGCECSFSTK SNLNKHMKAC HDQVRPFECR  780
VAGCGKTFPY KHVRDNHEKS SCHVYIEGDY EEMDEQLRSR RGGGRKRSAV TVETLTRKRV  840
TIPSEVSSLD DGAEYMRWML SDRDGSNHAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D1e-5494124330PLS9-PPR
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3745270.0AK374527.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3068C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181266.10.0putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic
TrEMBLA0A446V2890.0A0A446V289_TRITD; Uncharacterized protein
STRINGTraes_6AS_448C7608C.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-113transcription factor IIIA
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]