PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_4EEA3E388.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 237aa    MW: 26079.3 Da    PI: 6.4947
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_4EEA3E388.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.81.5e-37291291100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                            +C aCk+lrrkC+++Cv+ap+f++eq +++f  +hk+FGasnv+kll+ lp  +r++a++++ yeA+ar++dPvyG+v++i++lqqq 
  Traes_6AS_4EEA3E388.1  29 PCGACKFLRRKCVSGCVFAPHFCHEQgAAHFGTIHKVFGASNVSKLLTGLPSIDRRKAAATISYEAQARLHDPVYGCVAHIFALQQQA 116
                            7*************************89************************************************************ PP

                 DUF260  88 eqlkaelallkee 100
                             +l+a+l++lk++
  Traes_6AS_4EEA3E388.1 117 VNLQAQLESLKAQ 129
                            ********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.36528130IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-3629127IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MIHFTSCKEQ EYTTSIDQVA GAMIGFSSPC GACKFLRRKC VSGCVFAPHF CHEQGAAHFG  60
TIHKVFGASN VSKLLTGLPS IDRRKAAATI SYEAQARLHD PVYGCVAHIF ALQQQAVNLQ  120
AQLESLKAQA PQGYTNTCSV SSPEEDSIKA KVMAYQKGEA RMPRPAELCP AVKSESESYF  180
GNDLMTCTSM QSSQDYNISH VYTPDYTAPF NDEGIHSSTM LPVDIQEYLQ DNGNYWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-33251257106LOB family transfactor Ramosa2.1
5ly0_B7e-33251257106LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163832.11e-162LOB domain-containing protein 17-like
TrEMBLA0A3B6NK681e-179A0A3B6NK68_WHEAT; Uncharacterized protein
TrEMBLA0A446V3101e-179A0A446V310_TRITD; Uncharacterized protein
STRINGTraes_6AS_4EEA3E388.11e-180(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25013893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.17e-49LBD family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]