PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_99C6A3B0B.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 582aa    MW: 61888.1 Da    PI: 8.9929
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_99C6A3B0B.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.81.2e-41294370278
                            -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                            CqvegC+adls++k+yhr+h+vCe h+kap+v+v+gle+rfCqqCsrfh+l efD++krsCrrrL++hn+rrrk+q+
  Traes_6AS_99C6A3B0B.2 294 CQVEGCKADLSTVKDYHRKHRVCELHAKAPKVVVAGLERRFCQQCSRFHALAEFDQKKRSCRRRLNDHNSRRRKPQP 370
                            **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-33286355IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.633291368IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-39293373IPR004333Transcription factor, SBP-box
PfamPF031101.0E-31294367IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
GGGRPCAEGL RQQSFSPVDG AACSADDVPG TTARRVRGGA PWRSGALLIG LLGGGGGGGI  60
LLSFLLFSEE EEVKGGYHNL IFGPSSSGSS FAVRVGGGGA PEIFGSGMGS FGMEWNQRSS  120
VLWDWENFPP IGENPKNAMQ ADPRFAAVAA TMGNEPLHSS GGSGSGNFSS SSEMGYGSSK  180
SSMSASIDSS SKAGNNMEFR FAPVKNTDRN MSKNTELGKV DNTRTGTSPS PVVAVSSGEP  240
VIGLKLGKRT YFEDVCGGQS VKSSPSGAVS APNKSPAVGK KAKAEQQKPH NSYCQVEGCK  300
ADLSTVKDYH RKHRVCELHA KAPKVVVAGL ERRFCQQCSR FHALAEFDQK KRSCRRRLND  360
HNSRRRKPQP EAISFSSSRM STMFYDARQQ PNFLFGQAPY VQMRSCGSSS WDDPGGFKVT  420
HTKAPWLKPT TAAGVHGMHL SSQQMSDNIM PHGAHHGFDG FMSFKGTCTK FPNQGVQASA  480
VASDSSGAPD LQHALSLLSS NPVGAANLQP SPQMHSGVAA IAGAPNPAMH ALGSSVGLWL  540
DGGQPLDDHP RFQVFERWGD HDSELQLPKP SYDHASHFDR MH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-272943671184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1349366KKRSCRRRLNDHNSRRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478850.0KF447885.1 Triticum aestivum squamosa promoter-binding-like protein 3 (SPL3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187264.10.0squamosa promoter-binding-like protein 3
RefseqXP_020187265.10.0squamosa promoter-binding-like protein 3
RefseqXP_020187266.10.0squamosa promoter-binding-like protein 3
SwissprotA2X0Q60.0SPL3_ORYSI; Squamosa promoter-binding-like protein 3
SwissprotA3A2Z80.0SPL3_ORYSJ; Squamosa promoter-binding-like protein 3
TrEMBLA0A3B6NMU60.0A0A3B6NMU6_WHEAT; Uncharacterized protein
STRINGTraes_6AS_99C6A3B0B.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.36e-42squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]