PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_C1A37E015.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 235aa    MW: 25212.5 Da    PI: 6.3944
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_C1A37E015.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.7e-08161201954
                            HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Traes_6AS_C1A37E015.1 161 ARLRRERISERIRVLQRLVPGG-----TKMDTASMLDEAIHYVKFL 201
                            699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.8E-13151210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-14154211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-13158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-5162201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.75E-6174206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDFDLLMSSS PEAQLALMNT MLQLEQALND QSMMMGETSP PTSPVQTPSQ SLSPPPHVST  60
TCATADASYF YHQDLQTQAA AAGYAGTGGV HQEYVVSPGA AVFDGAGGTP QGYSSPSSSD  120
AMREMIFHIA ALQPVEVDLE AVRPPKRRNV RTSKDPQSVA ARLRRERISE RIRVLQRLVP  180
GGTKMDTASM LDEAIHYVKF LKSQVQSLEL AAAATGAAAH RAAAFAYPAL QHAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142147RPPKRR
2161166RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699600.0AK369960.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2102B12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177668.11e-139transcription factor HEC1-like
SwissprotQ9SND47e-41HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A3B6NLD11e-171A0A3B6NLD1_WHEAT; Uncharacterized protein
TrEMBLA0A446V8T71e-171A0A446V8T7_TRITD; Uncharacterized protein
STRINGTraes_6AS_C1A37E015.11e-172(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.15e-41bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]