PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_E0A257EEA.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 222aa    MW: 24095.4 Da    PI: 9.5453
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_E0A257EEA.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.71e-081491901054
                            HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHH..HHHHHH CS
                    HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAv..eYIksL 54 
                            +rRR+riN+++  L+ l+P++      K +Ka++L +A+  eY+k+L
  Traes_6AS_E0A257EEA.2 149 KRRRSRINEKMKALQILIPNS-----NKTDKASMLDEAIliEYLKQL 190
                            8*******************7.....5***********544999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.883139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-5149196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-11149207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-10149195No hitNo description
PfamPF000105.2E-6149190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-12149205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
IWCQGSGAGE RGSGDIPGGR GRRVPGGRRG GWGICVPTST SRSSSSCSAS PSSSPRFRRH  60
LEGATGFYKS EMGGSSEPES HGTSDCPRGG GGSSSKCTRA AEVHNLSERV VARFPVVNHF  120
PLSFTPLFCS SRPIFLADHC LLACLIGVKR RRSRINEKMK ALQILIPNSN KTDKASMLDE  180
AILIEYLKQL RLQVHDNEML KRQSESMTLQ CSCTVPLNIT QE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3747873e-33AK374787.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3076F24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561052.21e-28transcription factor SPATULA
RefseqXP_014752502.11e-28transcription factor SPATULA
RefseqXP_020169799.12e-28transcription factor PIF3-like
RefseqXP_020169800.12e-28transcription factor PIF3-like
TrEMBLA0A446VD691e-116A0A446VD69_TRITD; Uncharacterized protein
STRINGTraes_6AS_E0A257EEA.21e-162(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6054822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67110.11e-19bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]