PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_F1CEB89EE.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bZIP
Protein Properties Length: 313aa    MW: 32930.6 Da    PI: 5.3824
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_F1CEB89EE.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.32.6e-16136190360
                            XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                            ++kr rr+ +NRe+ArrsR+RK+a + eLe+ v++L + N    +  ++l++  ++ +
  Traes_6AS_F1CEB89EE.2 136 DVKRMRRMVSNRESARRSRKRKQAHLVELETQVDQLRGDNA---SIFKQLTDANQQFT 190
                            579*************************************7...66677777777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.0E-17134198IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.703136188IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.47E-12137189No hitNo description
PfamPF001704.1E-14137188IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.5E-12138189No hitNo description
CDDcd147023.49E-22139189No hitNo description
PROSITE patternPS000360141156IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MKKCASELEL EAFIRGRGLG AEQKPGTAAV GTANGPYGLF SAADLSGAFG FADATLNGTI  60
QTHLWSQSPN LGARHPAVST TIESQSSIYA AASPTSATNL SIKESQAFGG TSGSDSDSES  120
MFDDGGLCDN GTNPTDVKRM RRMVSNRESA RRSRKRKQAH LVELETQVDQ LRGDNASIFK  180
QLTDANQQFT TAVTDNRILK SDVEALRVKV KLAEDMVARG AMSCGLGHLG LSPAALNPCR  240
VPDVLAGLDF LPGGPDDACF GSLSPAEQVQ SSPMQSMASL ESLEHSSRMQ HGGGSDAVDV  300
WGWDSSSNGA MSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150156RRSRKRK
2150157RRSRKRKQ
3152157SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3542770.0AK354277.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1006E09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186609.10.0basic leucine zipper 63-like isoform X2
SwissprotQ6ETX01e-126RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
TrEMBLA0A3B6NN900.0A0A3B6NN90_WHEAT; Uncharacterized protein
TrEMBLA0A446V9Z70.0A0A446V9Z7_TRITD; Uncharacterized protein
STRINGTraes_6AS_F1CEB89EE.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-41basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH
    The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development.
    Plant Cell, 1994. 6(9): p. 1277-87
    [PMID:7919992]