PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BL_301505440.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Nin-like
Protein Properties Length: 204aa    MW: 23751.6 Da    PI: 8.2198
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BL_301505440.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK82.54.1e-2695142552
                 RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                            +s++++s++F +pik+AA eL+v+lT+LKr+CR++GI+RWPhRk+ksl
  Traes_6BL_301505440.1  95 LSFQQVSQCFCMPIKQAAEELNVGLTLLKRQCRELGIPRWPHRKLKSL 142
                            89********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.1279163IPR003035RWP-RK domain
PfamPF020421.1E-2195142IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MYLLQQWSFE YLLEISLFYP TQHLCDTSTS STTTTSQSYL LQDQQELEAR LEVHIMSLLA  60
ALEGEHHGGE KVLKGEVGRD AGEKKRNGPE EKPLLSFQQV SQCFCMPIKQ AAEELNVGLT  120
LLKRQCRELG IPRWPHRKLK SLETLIKNAQ ELGKPMVEVE MLQRKKKLIE ERPGHIELDE  180
ETKVLRQACF KEKFKRRRLM AMER
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194198KRRRL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756209.21e-64protein RKD1
SwissprotQ9FGD14e-31RKD3_ARATH; Protein RKD3
TrEMBLA0A3B6PRV81e-147A0A3B6PRV8_WHEAT; Uncharacterized protein
TrEMBLA0A446WL251e-147A0A446WL25_TRITD; Uncharacterized protein
STRINGTraes_6BL_301505440.11e-147(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45903365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66990.13e-33RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H
    RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis.
    New Phytol., 2017. 213(4): p. 1909-1924
    [PMID:27870062]