PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6BL_3F20B009E.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 166aa MW: 18944.5 Da PI: 9.086

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6BL_3F20B009E.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40	1.3e-12	63	143	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn Y+ e GF +r ks+ + + + +++ vC ++gk+ e+++ + +++C a +++ + +d+ w+++k + HnH+ Traes_6BL_3F20B009E.1 63 DFYNLYSWEKGFGIRYGKSRLNVERT-KCMQEIVCGCSGKAGVENTR---------SCHCECPALIRLLRAEDNGWYIAKHRDTHNHS 140 6***************99995544.67889***99887555.........999*************************** PP FAR1 89 lap 91 l+p Traes_6BL_3F20B009E.1 141 LSP 143 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.6E-9	63	143	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MNPRAPGWNK RLRIGAAAPS RPPCPNRISA FEKAVRRFAE NPTENVITPV IGTTFDSVDQ 60 AYDFYNLYSW EKGFGIRYGK SRLNVERTKC MQEIVCGCSG KAGVENTRSC HCECPALIRL 120 LRAEDNGWYI AKHRDTHNHS LSPNFGETIH WPSHKHIDVY IRDLVK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020169825.1	1e-105	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A446WSB0	1e-120	A0A446WSB0_TRITD; Uncharacterized protein
STRING	Traes_6BL_3F20B009E.1	1e-123	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	3e-12	FAR1-related sequence 7

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]