PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6BL_3F8DB6043.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

YABBY

Protein Properties

Length: 244aa MW: 26341.3 Da PI: 7.8299

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6BL_3F8DB6043.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	220.4	5.1e-68	19	203	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.........lleelkveeenlk 83 s +eq+Cyv+Cn C++ilav vP +slfk+vtvrCGhC++llsvnl+ aa + ++ ++ ll+e +++ +l Traes_6BL_3F8DB6043.1 19 SPTEQLCYVHCNCCDAILAVGVPCSSLFKTVTVRCGHCANLLSVNLRALLLPPAAPPANQLQFGHSllsptsphgLLDEVAFQTPSLL 106 578******************************************99966555555455555554555788885666665555555 PP YABBY 84 snvekeesastsvssekl..........senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161 + + +++ +++++++++ +p ++rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWa Traes_6BL_3F8DB6043.1 107 MDQASTNLXXXXXXXXXXxxxxxaakpaQQETEQSAKSAPSANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWA 194 55554444443333333244555666635555556666777******************************************* PP YABBY 162 hfPkihfgl 170 hfP+ihfgl Traes_6BL_3F8DB6043.1 195 HFPHIHFGL 203 *****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.9E-70	20	203	IPR006780	YABBY protein
SuperFamily	SSF47095	1.1E-7	146	196	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.9E-4	152	195	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MSSSSSSSAV FNLDHLAPSP TEQLCYVHCN CCDAILAVGV PCSSLFKTVT VRCGHCANLL 60 SVNLRALLLP PAAPPANQLQ FGHSLLSPTS PHGLLDEVAF QTPSLLMDQA STNLXXXXXX 120 XXXXXXXXXA AKPAQQETEQ SAKSAPSANR PPEKRQRVPS AYNRFIKDEI QRIKAGNPDI 180 THREAFSAAA KNWAHFPHIH FGLMPDQGFK RTFKVQDGAE DMLLKDGLYA AAAAAAANMS 240 VTPL

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to be associated with phloem cell differentiation. {ECO:0000269\|PubMed:17676337}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB274016	1e-112	AB274016.1 Oryza sativa Japonica Group OsYABBY4 mRNA for OsYABBY4 protein, complete cds.
GenBank	AK106784	1e-112	AK106784.1 Oryza sativa Japonica Group cDNA clone:002-115-H10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020155221.1	1e-152	protein YABBY 4-like isoform X2
Swissprot	A2X7Q3	1e-117	YAB4_ORYSI; Protein YABBY 4
Swissprot	Q6H668	1e-117	YAB4_ORYSJ; Protein YABBY 4
TrEMBL	A0A3B6QIK7	1e-150	A0A3B6QIK7_WHEAT; Uncharacterized protein
TrEMBL	A0A453P642	1e-150	A0A453P642_AEGTS; Uncharacterized protein
STRING	Traes_6BL_3F8DB6043.1	1e-166	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	2e-59	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]