PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BL_5D8EE6802.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 431aa    MW: 48075.6 Da    PI: 6.5517
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BL_5D8EE6802.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.81.2e-33257311155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            k r+rWtpeLHe+Fv+av++LGGsekAtPk++ ++mkv+gLt++hvkSHLQkYR+
  Traes_6BL_5D8EE6802.1 257 KSRMRWTPELHEKFVDAVDKLGGSEKATPKAVQKVMKVEGLTIYHVKSHLQKYRT 311
                            68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.475254314IPR017930Myb domain
SuperFamilySSF466897.17E-18254311IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-30255312IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-25257311IPR006447Myb domain, plants
PfamPF002491.4E-10259310IPR001005SANT/Myb domain
PfamPF143793.9E-15342388IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MIKDPFQWTE VDHRRGNAHG YTSIMSQFCN GEVPRFVPSD INVVQVLSEV TVPSFPEYRT  60
SYIERDLCGS SITSFGTLCQ PYMSASNFTS DLRINDGSPK GKLSFGSHVI AISGCDTSLP  120
SAHASYTGNP DYLRMVYPKV SEEINWGQGP LPGVLEYPAT IDVSDQRNVI VSQQSQDIIT  180
IDHSTHLAKH KEWYSSGSTE QFLGSSGSGG SVLKAADASM TPSNYAYFHG QKNRSSSFNV  240
DELCSDNLPC SDTTPTKSRM RWTPELHEKF VDAVDKLGGS EKATPKAVQK VMKVEGLTIY  300
HVKSHLQKYR TVRHQSESSD AGTSAERSSH MDEVCSQNMK HMEASEGLRT QIGLQKQLHA  360
QLELQRKMQL QVEEHSKYLE MVIARQGESL KQLGALPRFQ HSNVQAVDHK EAYREQTADT  420
DSAEMSHREK E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-26257315260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-26257315260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-26257315260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-26257315260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-26257315260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-26257315260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-26257315260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-26257315260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193217.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X2
RefseqXP_020193218.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X2
RefseqXP_020193219.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X2
TrEMBLA0A3B6PTE80.0A0A3B6PTE8_WHEAT; Uncharacterized protein
STRINGTraes_6BL_5D8EE6802.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54942526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.14e-47phosphate starvation response 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]