PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BL_7462E6F9B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRF
Protein Properties Length: 71aa    MW: 8043.33 Da    PI: 10.1182
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BL_7462E6F9B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC27.84.3e-095671116
                    WRC  1 daepgrCrRtDGKkWR 16
                           ++epgrCrRtDGKkWR
  Traes_6BL_7462E6F9B.1 56 EPEPGRCRRTDGKKWR 71
                           69*************9 PP
2QLQ39.61.6e-141261237
                    QLQ 12 ksQilAyKyLaanqPvPpeLlqaiqk 37
                           ++Q+l+y+y+aa++PvP +L+++i+k
  Traes_6BL_7462E6F9B.1  1 EHQVLIYRYFAAGAPVPVHLVLPIWK 26
                           8************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF088801.3E-7125IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.173126IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166712.6655671IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
EHQVLIYRYF AAGAPVPVHL VLPIWKSVAA SSFGPHRFPS LIGLGSLCFD YRSSMEPEPG  60
RCRRTDGKKW R
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0997371e-91FP099737.1 Phyllostachys edulis cDNA clone: bphyst023e19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180427.17e-47growth-regulating factor 10-like
SwissprotQ6EPP97e-44GRF10_ORYSJ; Growth-regulating factor 10
TrEMBLA0A1D6ARX71e-45A0A1D6ARX7_WHEAT; Growth regulating factor 7-B1
TrEMBLA0A1D6DHE11e-45A0A1D6DHE1_WHEAT; Growth regulating factor 7-A1
TrEMBLA0A446WHB01e-45A0A446WHB0_TRITD; Uncharacterized protein
TrEMBLA0A453PA072e-45A0A453PA07_AEGTS; Uncharacterized protein
STRINGMLOC_80060.13e-46(Hordeum vulgare)
STRINGTraes_6BL_7462E6F9B.13e-46(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62213051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.12e-16growth-regulating factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]