PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BL_948834CD4.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 92aa    MW: 10349.7 Da    PI: 8.486
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BL_948834CD4.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.4e-054380950
                           HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS
                    HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50
                            + RR+ri +++  L+el+P +    +k   Ka +L + ++Y
  Traes_6BL_948834CD4.2 43 MQVRRERISERMRYLQELVPGC----DKVTGKAGMLDEIINY 80
                           678******************9....4559999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.7433484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-74481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-84481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
GRPRTATASP NGYIDYRSIV VQTAIKPCVT TCMTQFDLVA HMMQVRRERI SERMRYLQEL  60
VPGCDKVTGK AGMLDEIINY XHQPPADSAS LM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3602388e-47AK360238.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1113K05.
GenBankAK3606208e-47AK360620.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1122A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A446WIE82e-26A0A446WIE8_TRITD; Uncharacterized protein
TrEMBLA0A446WIF12e-26A0A446WIF1_TRITD; Uncharacterized protein
STRINGTraes_6BL_948834CD4.21e-62(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82523749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.13e-18cryptochrome-interacting basic-helix-loop-helix 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]