PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BL_972224088.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 149aa    MW: 15699.2 Da    PI: 4.7651
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BL_972224088.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS114.81.1e-35214891240
                   GRAS  91 lkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeel 172
                            l+f+++ta qa+l++++ +  +++H+iDfd++ G+QW+++lq+La R+       p l++T+++s +s++  el+ t+++L++fA+ l
  Traes_6BL_972224088.1   2 LQFANFTATQALLDEIACSaaSCIHVIDFDLGVGGQWASFLQELAHRRgtggVALPLLKLTAFVSDASHHPLELHLTQDNLTQFAADL 89 
                            89************988776699************************976544599******************************** PP

                   GRAS 173 gvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv 240
                            g+pfefn++   +l+++++ eL   + +E +aV+l +          +l+     +L+lvk+l Pk+vv
  Traes_6BL_972224088.1  90 GIPFEFNAV---SLDAFSPAELISPTgDEIVAVSLPVGCSARA---PPLAV----ILRLVKQLGPKIVV 148
                            ********8...99********666689********9777665...55555....*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.3071149IPR005202Transcription factor GRAS
PfamPF035144.0E-332148IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MLQFANFTAT QALLDEIACS AASCIHVIDF DLGVGGQWAS FLQELAHRRG TGGVALPLLK  60
LTAFVSDASH HPLELHLTQD NLTQFAADLG IPFEFNAVSL DAFSPAELIS PTGDEIVAVS  120
LPVGCSARAP PLAVILRLVK QLGPKIVVA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3719460.0AK371946.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143M04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185793.15e-96scarecrow-like protein 6
TrEMBLM7YZX01e-101M7YZX0_TRIUA; Uncharacterized protein
STRINGTraes_6BL_972224088.11e-103(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.16e-29GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]