PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BL_AEB13ECDE.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 230aa    MW: 24107 Da    PI: 8.7576
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BL_AEB13ECDE.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-124489555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Traes_6BL_AEB13ECDE.2 44 HSIAERLRRERIAERMKALQELVPSA-----NKTDKASMLDEIIDYVKFLQ 89
                           99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.79E-133793No hitNo description
SuperFamilySSF474594.45E-173799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.1613988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-164198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-104489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-134594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080147Biological Processroot hair cell development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MHGAGAAQPP FGQVSQEPPR VQLWLCSEFH QRQRARRGQA TDPHSIAERL RRERIAERMK  60
ALQELVPSAN KTDKASMLDE IIDYVKFLQL QVKVLSMSRL GGAAAVGPLV AGLSSESSGN  120
GNGTSSSGDG NGDDDNGGST LRATEQQVAR LMEEDMGTAM QYLQGKGLCL MPISLASVIS  180
SATSSSLRSA TRPAGNAGGP LHEGGSPASP RLVNGVGADG SRTIRDGGRQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14853RLRRER
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3742250.0AK374225.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3058A22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170436.11e-99transcription factor bHLH82-like
SwissprotQ9LSQ35e-74BH082_ARATH; Transcription factor bHLH82
TrEMBLA0A446WPZ41e-165A0A446WPZ4_TRITD; Uncharacterized protein
STRINGTraes_6BL_AEB13ECDE.21e-166(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.14e-41LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Tam TH,Catarino B,Dolan L
    Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68
    [PMID:26150509]
  4. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]