PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BL_D87B09F77.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 259aa    MW: 27106.7 Da    PI: 8.3158
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BL_D87B09F77.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.001298120123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C+ C+k+F+++  L  H  +H
  Traes_6BL_D87B09F77.1  98 FECKACKKVFTSHQALGGHRASH 120
                            89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.4E-897120No hitNo description
SMARTSM003550.1398120IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-998122IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.22198125IPR007087Zinc finger, C2H2
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
SuperFamilySSF576671.4E-8218245No hitNo description
PfamPF139126.5E-13222246IPR007087Zinc finger, C2H2
SMARTSM003550.46223245IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349223245IPR007087Zinc finger, C2H2
PROSITE patternPS000280225245IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MVVGSGAIAE VQQPAPSSEE EDLANCLVML SSSRVTQPAV HVNADQESSA SASKDEERNR  60
LLVPQPLSII PPMTAQFKFS APQVVVAQHV PTVPRGLFEC KACKKVFTSH QALGGHRASH  120
KKVKGCFAAK LESSRNETTH QQTMASAALH DNTKAIPEVV GDTSTAEGRT GNLDANASGK  180
ATSVGAGEVG VPTAATEMAI MPIADAAPAP AAFSPFKKKG KVHECSICHR VFTSGQALGG  240
HKRCHWLTSS ATDPAKLQP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3735500.0AK373550.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3034L08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186304.11e-166uncharacterized protein LOC109772023
TrEMBLA0A446WGJ60.0A0A446WGJ6_TRITD; Uncharacterized protein
STRINGTraes_6BL_D87B09F77.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.14e-14C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]