PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6BS_05264DAEA.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bZIP

Protein Properties

Length: 353aa MW: 37231.4 Da PI: 6.6115

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6BS_05264DAEA.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	70.4	2.8e-22	250	312	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elk+++rk +NRe+ArrsR+RK+ae+eeL +++++L++eN++L+ el+++kke+++l s++ Traes_6BS_05264DAEA.2 250 ERELKKQKRKLSNRESARRSRLRKQAECEELGQRAEALKSENSSLRIELDRIKKEYEELLSKN 312 89***********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	1.6E-25	1	96	IPR012900	G-box binding protein, multifunctional mosaic region
Pfam	PF16596	2.3E-21	123	232	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.1E-15	248	309	No hit	No description
Pfam	PF00170	1.5E-20	250	312	IPR004827	Basic-leucine zipper domain
SMART	SM00338	1.9E-20	250	314	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.875	252	315	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-10	253	309	No hit	No description
CDD	cd14702	2.02E-23	255	305	No hit	No description
PROSITE pattern	PS00036	0	257	272	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MGSNDPSTPS KASKPPEQEQ PPATTSGTTA PVYPEWPGFQ GYPAMPPHGF FPPPVAAGQA 60 HPYMWGPQHM VPPYGTPPPP YMMYPPGTVY AHPTAPGVHP FHYPMQTNGN LEPAGAQGAA 120 PGAAETNGKN EPGKTSGPSA NGVTSNSESG SDSESEGSDA NSQNDSHSKE NDVNENGSAQ 180 NGVSHSSSHG TFNKPMPLVP VQSGAVIGVA GPATNLNIGM DYWGATGSSP VPAMRGKVPS 240 GSARGEQWDE RELKKQKRKL SNRESARRSR LRKQAECEEL GQRAEALKSE NSSLRIELDR 300 IKKEYEELLS KNTSLKAKLG ESGGGGGSDA VPDMNERGXX XXXXAAATRR SPD

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MGSNDPSTPS KASKPPEQEQ PPATTSGTTA PVYPEWPGFQ GYPAMPPHGF FPPPVAAGQA  60
HPYMWGPQHM VPPYGTPPPP YMMYPPGTVY AHPTAPGVHP FHYPMQTNGN LEPAGAQGAA  120
PGAAETNGKN EPGKTSGPSA NGVTSNSESG SDSESEGSDA NSQNDSHSKE NDVNENGSAQ  180
NGVSHSSSHG TFNKPMPLVP VQSGAVIGVA GPATNLNIGM DYWGATGSSP VPAMRGKVPS  240
GSARGEQWDE RELKKQKRKL SNRESARRSR LRKQAECEEL GQRAEALKSE NSSLRIELDR  300
IKKEYEELLS KNTSLKAKLG ESGGGGGSDA VPDMNERGXX XXXXAAATRR SPD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	252	259	LKKQKRKL
2	266	272	RRSRLRK
3	266	273	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	WHTHBP1A	0.0	M28704.1 Wheat sequence-specific DNA binding protein mRNA, complete cds.
GenBank	X56781	0.0	X56781.1 T.aestivum 1a-17 gene for HBP-1a (leucine zipper type transcription factor).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020196572.1	0.0	uncharacterized protein LOC109782370
Swissprot	P23922	0.0	HBP1A_WHEAT; Transcription factor HBP-1a
TrEMBL	A0A446W2X8	0.0	A0A446W2X8_TRITD; Uncharacterized protein
STRING	Traes_6BS_05264DAEA.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2147	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35530.1	7e-48	basic region/leucine zipper transcription factor 16

Publications ? help Back to Top
Tabata T,Nakayama T,Mikami K,Iwabuchi M HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat. EMBO J., 1991. 10(6): p. 1459-67 [PMID:2026143] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Tabata T, et al. A protein that binds to a cis-acting element of wheat histone genes has a leucine zipper motif. Science, 1989. 245(4921): p. 965-7 [PMID:2772648] Mikami K, et al. Developmental and tissue-specific regulation of the gene for the wheat basic/leucine zipper protein HBP-1a(17) in transgenic Arabidopsis plants. Mol. Gen. Genet., 1995. 248(5): p. 573-82 [PMID:7476857] Nakayama T,Okanami M,Meshi T,Iwabuchi M Dissection of the wheat transcription factor HBP-1a(17) reveals a modular structure for the activation domain. Mol. Gen. Genet., 1997. 253(5): p. 553-61 [PMID:9065688] Okanami M,Meshi T,Tamai H,Iwabuchi M HALF-1, a bZIP-type protein, interacting with the wheat transcription factor HBP-1a contains a novel transcriptional activation domain. Genes Cells, 1996. 1(1): p. 87-99 [PMID:9078369]