PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6BS_179B5B6E1.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 215aa MW: 23636.5 Da PI: 6.6587

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6BS_179B5B6E1.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	118.8	3.3e-37	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC+++Cv+ap+f++eq +++f ++hk+FGasnv+kll++lp +r++a++++ yeA+ar++ PvyG+v++i++lqqq Traes_6BS_179B5B6E1.1 7 PCGACKFLRRKCVNGCVFAPHFCHEQgAAHFGAIHKVFGASNVSKLLTSLPAIDRREAAATISYEAQARLHHPVYGCVAHIFALQQQA 94 7***********************89******************************************************** PP DUF260 88 eqlkaelallkee 100 +l+a+l++lk++ Traes_6BS_179B5B6E1.1 95 VNLQAQLESLKAQ 107 ******99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.252	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.2E-36	7	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MTGFSSPCGA CKFLRRKCVN GCVFAPHFCH EQGAAHFGAI HKVFGASNVS KLLTSLPAID 60 RREAAATISY EAQARLHHPV YGCVAHIFAL QQQAVNLQAQ LESLKAQAPQ GYTNTYSASS 120 PEEDSIKAEV MACQKGEARM PRPAELCPSV KSESESYFGN GLMTCNSMQS SQDYNISHVY 180 TPNYTAPFND DGIHSSTMFP VDIQEYLQEN GNYWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-32	3	103	7	106	LOB family transfactor Ramosa2.1
5ly0_B	6e-32	3	103	7	106	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269\|PubMed:15829602, ECO:0000269\|PubMed:15960615, ECO:0000269\|PubMed:21806801}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269\|PubMed:15829602, ECO:0000269\|PubMed:15960615}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020163832.1	1e-142	LOB domain-containing protein 17-like
Swissprot	Q5UG13	2e-60	LBD_ORYSJ; LOB domain-containing protein CRL1
TrEMBL	A0A3B6PHJ6	1e-161	A0A3B6PHJ6_WHEAT; Uncharacterized protein
TrEMBL	A0A446W0M5	1e-161	A0A446W0M5_TRITD; Uncharacterized protein
STRING	Traes_6BS_179B5B6E1.1	1e-162	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2501	38	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	3e-50	LBD family protein

Publications ? help Back to Top
Coudert Y,Périn C,Courtois B,Khong NG,Gantet P Genetic control of root development in rice, the model cereal. Trends Plant Sci., 2010. 15(4): p. 219-26 [PMID:20153971] Kitomi Y, et al. The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. Plant J., 2011. 67(3): p. 472-84 [PMID:21481033] Coudert Y, et al. Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice. BMC Genomics, 2011. 12: p. 387 [PMID:21806801] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]