PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BS_460814030.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 161aa    MW: 16962.1 Da    PI: 9.9324
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BS_460814030.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.7e-08100125227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            kt+lC+ +     Ck Gd+C+FaHg+
  Traes_6BS_460814030.1 100 KTKLCNKYNTAEGCKWGDKCHFAHGE 125
                            8***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.43259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0333260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-63358IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-73457IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-1495128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-997129IPR000571Zinc finger, CCCH-type
SMARTSM003560.06398125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.21698126IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-5100125IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MEGGGRKRGT HDGASVGGKR TRESESFQTG VGSKSKPCTK FFSTAGCPFG EGCHFLHYFP  60
GGHQAVAKMS NLGGQAFAHP QGRVPAGSAV PDGHPTPTVK TKLCNKYNTA EGCKWGDKCH  120
FAHGERELGK QTFINNSMPP HMGPRPTGHF GPPAMPSPGM A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164455.11e-112zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R02e-84C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A3B6PLU91e-114A0A3B6PLU9_WHEAT; Uncharacterized protein
STRINGTraes_6AS_70AD4B0D5.11e-112(Triticum aestivum)
STRINGTraes_6BS_460814030.11e-114(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-24C3H family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]