PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BS_73A93153A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 294aa    MW: 33095.3 Da    PI: 4.8102
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BS_73A93153A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.17.4e-124989244
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
        Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                             WT  E + l++av  +G + Wk++++++g  R++k+c+ r+
  Traes_6BS_73A93153A.1 49 SDWTDKETLHLLEAVLHYGED-WKKVSEHVG-SRSEKDCIARL 89
                           67*****************99.*********.*******9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129316.5914697IPR017884SANT domain
SMARTSM007171.5E-74795IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-94888IPR009057Homeodomain-like
SuperFamilySSF466896.21E-114897IPR009057Homeodomain-like
PfamPF002492.6E-114989IPR001005SANT/Myb domain
CDDcd001677.03E-75188No hitNo description
PfamPF164951.1E-14199275IPR032451SMARCC, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
KSCYFLSLTF AYDQADISIC CRCFVRGNYR PGLTPADFKK VEISEDAKSD WTDKETLHLL  60
EAVLHYGEDW KKVSEHVGSR SEKDCIARLI RLSFGEQFMG SKEQKMEFEI DDDVTNESRA  120
EIPKRLRLTP LADASNPIMA QVAFLSAIVG SGVAAAAAQA AISAQSQVDM NDSQTDSPIS  180
STKEEESSYT NGLSANDLLK EASTNAQVQL QKEQKDIEQS LSAIVDVQMK EIQDKISRFE  240
QKELLMEKER EQLHHLRELL FVDQLAVVQH QRRPHAVAAE NKEEEKPKPI ITMS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3713410.0AK371341.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2131G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169324.10.0SWI/SNF complex subunit SWI3B
TrEMBLA0A3B6PLS00.0A0A3B6PLS0_WHEAT; Uncharacterized protein
TrEMBLA0A446W9910.0A0A446W991_TRITD; Uncharacterized protein
STRINGTraes_6BS_73A93153A.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP941744
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]