PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BS_96BBFCC97.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 79aa    MW: 9438.43 Da    PI: 5.902
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BS_96BBFCC97.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.7e-18453857
                           -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
               Homeobox  8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                           +++q+++Le++F ++++p++++r++ +++l+++ + +k+WF+NrRa++++
  Traes_6BS_96BBFCC97.1  4 SDNQIQILESVFIECPNPDEAQRAHHSRELRVEPQHIKIWFKNRRAQMRR 53
                           789*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.349154IPR001356Homeobox domain
CDDcd000864.29E-12353No hitNo description
SuperFamilySSF466897.7E-15365IPR009057Homeodomain-like
SMARTSM003891.4E-7358IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.7E-16358IPR009057Homeodomain-like
PfamPF000462.7E-15453IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MDLSDNQIQI LESVFIECPN PDEAQRAHHS RELRVEPQHI KIWFKNRRAQ MRRARHEQVD  60
NHLSGSENDE IDLKSDEIH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438026.15e-18homeobox-leucine zipper protein ROC8
SwissprotQ69T586e-18ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A3B6PGT71e-50A0A3B6PGT7_WHEAT; Uncharacterized protein
TrEMBLA0A446W2141e-50A0A446W214_TRITD; Uncharacterized protein
STRINGTraes_6BS_96BBFCC97.12e-51(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3702333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.12e-18homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]