PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BS_AB5909D02.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 181aa    MW: 19495.1 Da    PI: 10.4278
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BS_AB5909D02.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.53.3e-1789126136
                   GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                            C++Cg ++  Tp++Rrgpdg++tLCnaCGl ++ kg++
  Traes_6BS_AB5909D02.2  89 CQHCGISSnnTPMMRRGPDGPRTLCNACGLAWANKGMM 126
                            *****99889*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062038.6E-181961IPR010402CCT domain
PROSITE profilePS5101713.5331961IPR010402CCT domain
SMARTSM004015.3E-1283136IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-1187130No hitNo description
Gene3DG3DSA:3.30.50.101.9E-1588129IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.43E-1288127No hitNo description
PROSITE patternPS00344089116IPR000679Zinc finger, GATA-type
PfamPF003201.8E-1489124IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MGVGPSSSAS YSKRLNSHRM ASLMRFREKR KERNFDKKIR YSVRKEVAHR MQRHKGQFTS  60
SKAKAEEAAA AANSDWGAVE GRPLSAPVCQ HCGISSNNTP MMRRGPDGPR TLCNACGLAW  120
ANKGMMREVK GHTPLKVVPP ATDDAQNGVA EAPTAEQQHL ALEAAPEAPV APAPAANGHD  180
S
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3588960.0AK358896.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1085G16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166796.11e-131GATA transcription factor 17-like isoform X1
SwissprotQ6Z4332e-75GAT17_ORYSJ; GATA transcription factor 17
TrEMBLA0A446W5J31e-131A0A446W5J3_TRITD; Uncharacterized protein
TrEMBLA0A453NBS61e-131A0A453NBS6_AEGTS; Uncharacterized protein
STRINGEMT242161e-131(Aegilops tauschii)
STRINGTraes_6AS_4106E8E28.11e-131(Triticum aestivum)
STRINGTraes_6BS_AB5909D02.21e-132(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-47ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]