PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BS_C53202201.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 92aa    MW: 10608.3 Da    PI: 7.6839
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BS_C53202201.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.4e-142069255
                           HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           r+ h + Er RR+r+ + f +L  llP++   p  K++K++i+ +A++YIksL+
  Traes_6BS_C53202201.1 20 RELHIITERERRRRMSEMFTKLHGLLPTL---P-DKVDKSSIVMEAIHYIKSLE 69
                           889*************************6...3.9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.8561868IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-171982IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-122069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-162081IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-82474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.57E-63369No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
DHDSAGRSCS QIXXXXXXXR ELHIITERER RRRMSEMFTK LHGLLPTLPD KVDKSSIVME  60
AIHYIKSLEG TVSELEKQKL ERDFARGNPA DA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that controls embryo growth (PubMed:18567831, PubMed:18849529, PubMed:23318634). Regulates endosperm breakdown and embryonic epidermal development. Regulates the expression of SBT2.4/ALE1 (PubMed:18849529, PubMed:23318634). Involved in embryonic cuticle formation upstream of SBT2.4/ALE1 (PubMed:23318634). Does not seem to be a general regulator of endosperm patterning. May control specific signaling pathways that coordinate embryo invasion and breakdown of surrounding endosperm tissues (PubMed:18849529). Required for the production the embryo sheath, an extracuticular endosperm-derived structure at the surface of the embryo. Acts upstream of KRS (PubMed:28696222). {ECO:0000269|PubMed:18567831, ECO:0000269|PubMed:18849529, ECO:0000269|PubMed:23318634, ECO:0000269|PubMed:28696222}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3731551e-79AK373155.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3022J13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146364.13e-35transcription factor bHLH95-like
SwissprotQ9FXA36e-20BH095_ARATH; Transcription factor bHLH95
TrEMBLA0A3B6PIA83e-44A0A3B6PIA8_WHEAT; Uncharacterized protein
TrEMBLA0A446W5093e-44A0A446W509_TRITD; Uncharacterized protein
STRINGTraes_6BS_C53202201.16e-55(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.15e-17bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Zhang Y, et al.
    Reduced function of the RNA-binding protein FPA rescues a T-DNA insertion mutant in the Arabidopsis ZHOUPI gene by promoting transcriptional read-through.
    Plant Mol. Biol., 2016. 91(4-5): p. 549-61
    [PMID:27164978]
  4. Fourquin C, et al.
    Mechanical stress mediated by both endosperm softening and embryo growth underlies endosperm elimination in Arabidopsis seeds.
    Development, 2016. 143(18): p. 3300-5
    [PMID:27287798]
  5. Du Q,Wang H
    Retarded Embryo Development 1 (RED1) regulates embryo development, seed maturation and plant growth in Arabidopsis.
    J Genet Genomics, 2016. 43(7): p. 439-49
    [PMID:27477025]
  6. Moussu S, et al.
    ZHOUPI and KERBEROS Mediate Embryo/Endosperm Separation by Promoting the Formation of an Extracuticular Sheath at the Embryo Surface.
    Plant Cell, 2017. 29(7): p. 1642-1656
    [PMID:28696222]