PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BS_E7F14E50B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 41aa    MW: 4530.01 Da    PI: 8.9747
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BS_E7F14E50B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.83.7e-13732127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                           +kt+lC++f + G C +GdrC+FaHg+
  Traes_6BS_E7F14E50B.1  7 FKTKLCDNFTK-GSCTFGDRCHFAHGE 32
                           79*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.2E-18237IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-11536IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-8632IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.821633IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-11732IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 41 aa     Download sequence    Send to blast
SHRGSNFKTK LCDNFTKGSC TFGDRCHFAH GENELRKSAA A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164455.12e-18zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R06e-19C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A446W9444e-20A0A446W944_TRITD; Uncharacterized protein
STRINGTraes_6BS_E7F14E50B.16e-22(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-18C3H family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]