PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BS_F50663DF7.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 479aa    MW: 51490 Da    PI: 9.9233
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BS_F50663DF7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.37.9e-42264340278
                            -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                            CqvegC+adls++k+yhr+h+vCe hskap+v+v+gle+rfCqqCsrfh+l efD++krsCrrrL++hn+rrrk+q+
  Traes_6BS_F50663DF7.1 264 CQVEGCKADLSSVKDYHRKHRVCELHSKAPKVVVAGLERRFCQQCSRFHALAEFDQKKRSCRRRLNDHNSRRRKPQP 340
                            **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.5E-34256325IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.684261338IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.31E-39263343IPR004333Transcription factor, SBP-box
PfamPF031101.0E-31264337IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MAAPAXXXXX XXPGSSVVAL WHAADRAGRR EEFCCLSCCF LGEGGGRRWN HNLIFGPSSG  60
GSFAVRVGGG AAPEIFGSRM GSFGMEWNQR SSVLWDWENF PPIGNNPKNA MQADPRFAGV  120
AATMGNEPLH SSGGSGTFSS SSEMGYGSSK SSMSVSIDSS SRAGNNMEFR FAPVKNPDRN  180
TSKNPELGKV DNTRTGTSPS SVVAVSSGEP VIGLKLGKRT YFEDVCGGQS VKSLPSGAAS  240
APNKSPALGK KAKAEQQKPH NSYCQVEGCK ADLSSVKDYH RKHRVCELHS KAPKVVVAGL  300
ERRFCQQCSR FHALAEFDQK KRSCRRRLND HNSRRRKPQP EAISFSSSRM STMFYDARQQ  360
PNFLFGQAPY VQMRSCGSSS WDDPGGFKVT HTKAPWLKPT TAAGVHGMHL SSQQMSDNIM  420
PHGAHHGFDG FMAFKGTCIK FPNQGVQASA VASDSSGAPD LQHALSLLSS NPVGAANLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-272643371184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319336KKRSCRRRLNDHNSRRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478850.0KF447885.1 Triticum aestivum squamosa promoter-binding-like protein 3 (SPL3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187264.10.0squamosa promoter-binding-like protein 3
RefseqXP_020187265.10.0squamosa promoter-binding-like protein 3
RefseqXP_020187266.10.0squamosa promoter-binding-like protein 3
SwissprotA2X0Q61e-164SPL3_ORYSI; Squamosa promoter-binding-like protein 3
SwissprotA3A2Z81e-164SPL3_ORYSJ; Squamosa promoter-binding-like protein 3
TrEMBLA0A3B6PK060.0A0A3B6PK06_WHEAT; Uncharacterized protein
TrEMBLA0A446W4Q30.0A0A446W4Q3_TRITD; Uncharacterized protein
STRINGTraes_6BS_F50663DF7.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-44squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]