PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_09329CC5D.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 74aa    MW: 8590.8 Da    PI: 10.684
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_09329CC5D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix89.14.8e-28673168
               trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68
                           rW+++e+ aLi++r+em+ ++r+++lk+p Weevs+k++e g++rs+k+Ckek+en+ k+y+++keg+
  Traes_6DL_09329CC5D.1  6 RWPREETVALIRIRSEMDGAFRNAALKAPVWEEVSRKLAELGYRRSAKKCKEKFENVDKYYRRTKEGR 73
                           8****************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122038.49E-25570No hitNo description
PfamPF138377.0E-20572No hitNo description
Gene3DG3DSA:1.10.10.602.9E-4562IPR009057Homeodomain-like
PROSITE profilePS500907.004563IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
GGSGSRWPRE ETVALIRIRS EMDGAFRNAA LKAPVWEEVS RKLAELGYRR SAKKCKEKFE  60
NVDKYYRRTK EGRA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3754941e-111AK375494.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3095N08.
GenBankAK3761291e-111AK376129.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3115F22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184216.16e-40trihelix transcription factor GTL1-like
RefseqXP_020184217.16e-40trihelix transcription factor GTL1-like
SwissprotQ391171e-33TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A287UDE49e-41A0A287UDE4_HORVV; Uncharacterized protein
TrEMBLA0A287UDK12e-40A0A287UDK1_HORVV; Uncharacterized protein
TrEMBLA0A287UDK85e-40A0A287UDK8_HORVV; Uncharacterized protein
TrEMBLA0A287UDK94e-40A0A287UDK9_HORVV; Uncharacterized protein
TrEMBLF2EH674e-40F2EH67_HORVV; Predicted protein
TrEMBLF2EJ024e-40F2EJ02_HORVV; Predicted protein
STRINGTraes_6DL_09329CC5D.12e-46(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP152231218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.25e-36Trihelix family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]