PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6DL_1571314A3.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 41aa MW: 4839.73 Da PI: 10.0218

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6DL_1571314A3.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.7	2.1e-08	1	38	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R++i +++ +L+el+P+ +K++ +++LekA Y+k Lq Traes_6DL_1571314A3.1 1 REKISERLRTLQELVPNG-----TKVDMVTMLEKAFSYVKFLQ 38 89************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.67E-11	1	40	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.39E-7	1	41	No hit	No description
PROSITE profile	PS50888	12.779	1	37	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.6E-6	1	38	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-10	1	41	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 41 aa Download sequence Send to blast
REKISERLRT LQELVPNGTK VDMVTMLEKA FSYVKFLQLQ V

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK372884	1e-52	AK372884.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3015A08.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020147146.1	1e-20	transcription factor SPATULA-like
Refseq	XP_020147154.1	9e-21	transcription factor bHLH84-like
Refseq	XP_020147163.1	9e-21	transcription factor bHLH84-like
Refseq	XP_020155972.1	1e-20	putative transcription factor bHLH086
Swissprot	Q9C707	7e-18	BH083_ARATH; Transcription factor bHLH83
TrEMBL	A0A3B6PQV5	2e-19	A0A3B6PQV5_WHEAT; Uncharacterized protein
TrEMBL	A0A3B6QH58	2e-19	A0A3B6QH58_WHEAT; Uncharacterized protein
TrEMBL	A0A3B6QJ79	2e-19	A0A3B6QJ79_WHEAT; Uncharacterized protein
TrEMBL	A0A446WIL5	2e-19	A0A446WIL5_TRITD; Uncharacterized protein
TrEMBL	A0A453PDH6	2e-19	A0A453PDH6_AEGTS; Uncharacterized protein
TrEMBL	A0A453PDQ3	2e-19	A0A453PDQ3_AEGTS; Uncharacterized protein
TrEMBL	A0A453PE06	1e-19	A0A453PE06_AEGTS; Uncharacterized protein
TrEMBL	M8BPV5	2e-20	M8BPV5_AEGTA; Uncharacterized protein
TrEMBL	M8C9V6	2e-20	M8C9V6_AEGTA; Transcription factor bHLH83
STRING	EMT23827	3e-21	(Aegilops tauschii)
STRING	Traes_6BL_9B25E6A10.1	2e-21	(Triticum aestivum)
STRING	Traes_6DL_1571314A3.1	2e-21	(Triticum aestivum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66470.1	3e-20	ROOT HAIR DEFECTIVE6

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Coego A, et al. The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression. Plant J., 2014. 77(6): p. 944-53 [PMID:24456507] Lin CY, et al. Pathways involved in vanadate-induced root hair formation in Arabidopsis. Physiol Plant, 2015. 153(1): p. 137-48 [PMID:24833217] Grierson C,Nielsen E,Ketelaarc T,Schiefelbein J Root hairs. Arabidopsis Book, 2014. 12: p. e0172 [PMID:24982600] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Moro CF, et al. S-nitrosoglutathione promotes cell wall remodelling, alters the transcriptional profile and induces root hair formation in the hairless root hair defective 6 (rhd6) mutant of Arabidopsis thaliana. New Phytol., 2017. 213(4): p. 1771-1786 [PMID:27880005] Bahmani R,Kim DG,Kim JA,Hwang S The Density and Length of Root Hairs Are Enhanced in Response to Cadmium and Arsenic by Modulating Gene Expressions Involved in Fate Determination and Morphogenesis of Root Hairs in Arabidopsis. Front Plant Sci, 2016. 7: p. 1763 [PMID:27933081] Liao X,Lovett B,Fang W,St Leger RJ Metarhizium robertsii produces indole-3-acetic acid, which promotes root growth in Arabidopsis and enhances virulence to insects. Microbiology (Reading, Engl.), 2017. 163(7): p. 980-991 [PMID:28708056] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]