PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_244C908B5.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 584aa    MW: 61152.5 Da    PI: 9.0071
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_244C908B5.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0592114123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C+ C+k F r  nL+ H r H
  Traes_6DL_244C908B5.2  92 FVCEVCNKGFQREQNLQLHRRGH 114
                            89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.26E-791114No hitNo description
Gene3DG3DSA:3.30.160.608.1E-691114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.09492114IPR007087Zinc finger, C2H2
PfamPF121713.8E-592114IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.004192114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.9E-4157190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.26E-7164189No hitNo description
SMARTSM00355210169189IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MASNSSAAAV AALFGIREGH QQDQMKPLLA QHQRQHVVAP PSALLTAGPD QAAAAAPPVK  60
KKRTMPVPVL SPDPDAEVIA LSPKTLMATN RFVCEVCNKG FQREQNLQLH RRGHNLPWKL  120
KQKDPNQVQR RRVYLCPEPT CVHHEPGRAL GDLTGIKKHF CRKHGEKKWK CDKCAKRYAV  180
QSDWKAHSKI CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AQESARLPPG AGHLYGATGA  240
ANMALSLSQV GSSLHDAHGQ YHQASSDLLR FGGGGGGGMA ARLDHLLSSS NAPSFRHLPP  300
PQAPPFHLGS AQEFVDGNGS PAFLHGKPFH GLMQLPDLQG NGSGGTSSSA PGLFNLGYIA  360
NSANSSGTSS HGHASQGHMA NDQISEGGGG GGAGSENSGA AFFSAGGNFS GGDHQVAPSG  420
MYNEQSVMMP QMSATALLQK AAQMGSSTSA DGGGASVFGG FMGSSVPQGR APMLDQGQMQ  480
LQSLMNSLAG GGNGGGMFGG ANGRGMIDPR LYDMDQHEVK FSQGRGGAVG GGDVTRDFLG  540
VGGRGDMIRG MSVARGENHS GSDMSFLEAE MKSASSPFNG GRMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34165227365Zinc finger protein JACKDAW
5b3h_F2e-34165227365Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3591320.0AK359132.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1090F15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179604.10.0protein indeterminate-domain 4, chloroplastic-like
TrEMBLA0A446VJD10.0A0A446VJD1_TRITD; Uncharacterized protein
STRINGTraes_6DL_244C908B5.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-104C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]