PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_3019F176A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 257aa    MW: 26819.7 Da    PI: 7.13
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_3019F176A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-1884133255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Traes_6DL_3019F176A.1  84 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 133
                            69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.99884141IPR001471AP2/ERF domain
SMARTSM003805.2E-3784147IPR001471AP2/ERF domain
PfamPF008472.4E-1284133IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2184142IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-3284142IPR001471AP2/ERF domain
PRINTSPR003671.2E-108596IPR001471AP2/ERF domain
CDDcd000182.50E-3185143No hitNo description
PRINTSPR003671.2E-10107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
NLPVPCLASH RNTPLTSSRS RPSLPNNNST TTVSSAVGAT EDSSSGSETT TSSSVEALAS  60
PPSPTATTAS SKKKRPRNDG RHPTYRGVRM RSWGKWVSEI REPRKKSRIW LGTFATAEMA  120
ARAHDVAALA IKGRAAHLNF PDLAHELPRP ATAAPKDVQA AAALAASADF PASATAAANA  180
GAKNPDGPEP SAASASASPP PDTAEDALFD LPDLLFDLRH GPPSCQLSCA SSWDDDVAFA  240
GAGAGVFRLE EPLQWEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17821471275Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7858630.0AY785863.1 Hordeum vulgare subsp. vulgare cultivar Morex HvCBF7 (CBF7) mRNA, complete cds.
GenBankAY7858640.0AY785864.1 Hordeum vulgare subsp. vulgare cultivar Dicktoo HvCBF7 (CBF7) gene, complete cds.
GenBankAY7858650.0AY785865.1 Hordeum vulgare subsp. vulgare cultivar Strider HvCBF7 (CBF7) gene, complete cds.
GenBankAY7858660.0AY785866.1 Hordeum vulgare subsp. vulgare cultivar 88Ab536 HvCBF7 (CBF7) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194841.11e-156ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ77e-56ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A453P8S81e-154A0A453P8S8_AEGTS; Uncharacterized protein
STRINGTraes_6DL_3019F176A.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.14e-39ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]