PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_410C5CD3B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 141aa    MW: 15649.7 Da    PI: 9.2734
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_410C5CD3B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.25.3e-196194134
                   GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                           C++C+  kTp+WR gp g+ktLCnaCG++y++ +
  Traes_6DL_410C5CD3B.1 61 CTHCQIDKTPQWRAGPLGPKTLCNACGVRYKSGR 94
                           *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.3325591IPR000679Zinc finger, GATA-type
SMARTSM004015.6E-1655105IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.8E-155992IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.9E-1559118No hitNo description
CDDcd002021.08E-1460117No hitNo description
PROSITE patternPS0034406186IPR000679Zinc finger, GATA-type
PfamPF003209.8E-176195IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MFSSTSSYSE EPECIAESNS QPKKKKKAKR PTPPVTSDAE GDADYEEGSG TALAPGEVRR  60
CTHCQIDKTP QWRAGPLGPK TLCNACGVRY KSGRLFPEYR PAASPTFVPA IHSNSHKKVV  120
EMRQKVEPKG DDLLQFIRRR D
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3536490.0AK353649.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1001M24.
GenBankAK3566850.0AK356685.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1038B06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165199.11e-100GATA transcription factor 11-like
RefseqXP_020165203.11e-100GATA transcription factor 11-like
SwissprotQ6DBP82e-39GAT11_ARATH; GATA transcription factor 11
TrEMBLA0A453PZI71e-100A0A453PZI7_AEGTS; Uncharacterized protein
STRINGEMT096791e-99(Aegilops tauschii)
STRINGTraes_6DL_410C5CD3B.11e-101(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-40GATA family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]