PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_52A25BEA4.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 222aa    MW: 24765.4 Da    PI: 10.6907
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_52A25BEA4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.41.5e-1912753499
                           SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                           +t++ +d +g  W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + +++ l+v+++r+
  Traes_6DL_52A25BEA4.1 12 QTVIAKDVHGTAWKFRHIYRGTPRRHLLTTGWSAFVNQKKLVAGDSIVFL--RGDGGDLHVGIRRA 75
                           38999*********************************************..3488999*****97 PP
2Auxin_resp115.45.1e-38119202183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                            aa+ a ++++FevvY Prast+eF+v+++ v++a++v++++GmRfkmafetedss++++ +Gtv+gv+ ++p+rWp+S+Wr+L+
  Traes_6DL_52A25BEA4.1 119 AARLAGSGQPFEVVYFPRASTPEFCVRAAAVRAAMRVQWCPGMRFKMAFETEDSSRISWfMGTVAGVQVAHPTRWPQSPWRLLQ 202
                            6778899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-25177IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.252176IPR003340B3 DNA binding domain
SMARTSM010195.8E-4176IPR003340B3 DNA binding domain
SuperFamilySSF1019361.28E-18376IPR015300DNA-binding pseudobarrel domain
CDDcd100173.13E-161274No hitNo description
PfamPF023624.0E-171275IPR003340B3 DNA binding domain
PfamPF065072.4E-32119202IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
PRLDYAADPP VQTVIAKDVH GTAWKFRHIY RGTPRRHLLT TGWSAFVNQK KLVAGDSIVF  60
LRGDGGDLHV GIRRAKRGFC GAEEGSLSLT GWGRYSGPMR GNASPCTRGK VRAEDVVEAA  120
RLAGSGQPFE VVYFPRASTP EFCVRAAAVR AAMRVQWCPG MRFKMAFETE DSSRISWFMG  180
TVAGVQVAHP TRWPQSPWRL LQVTWDEPDL LQNVKRVSPW LV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-501220185385Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432301e-117AK243230.1 Oryza sativa Japonica Group cDNA, clone: J100044L04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164996.11e-160auxin response factor 8-like
SwissprotQ6K2231e-129ARFH_ORYSJ; Auxin response factor 8
TrEMBLA0A3B6QFK51e-158A0A3B6QFK5_WHEAT; Auxin response factor
TrEMBLA0A446WF481e-158A0A446WF48_TRITD; Auxin response factor
STRINGTraes_6DL_52A25BEA4.11e-163(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-104auxin response factor 16
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]