PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_59DB06B9F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family YABBY
Protein Properties Length: 258aa    MW: 27646.4 Da    PI: 8.2302
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_59DB06B9F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY196.31.4e-60192175170
                  YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.....................l 71 
                            s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl+      +a    + ++ ++                     l
  Traes_6DL_59DB06B9F.1  19 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRALLLPPTAPPANQLQFGHSllsptsphglldevafqtpslL 106
                            578********************************************99966666555555555555566899997777766544431 PP

                  YABBY  72 leelkveeenlksnvekeesastsvssekl...........senedeevprvppvir........PPekrqrvPsaynrfikeeiqri 140
                              ++ +++ +  +  +++++as+      l           +++++++++ +p ++r         PekrqrvPsaynrfik+eiqri
  Traes_6DL_59DB06B9F.1 107 -MDQASTNLSGFTGRSNSSCASN------LpampmpaakpaQQETEQSAKSAPSANRrkdqlflsAPEKRQRVPSAYNRFIKDEIQRI 187
                            .1111111111112222222222......1223446777753333333333344554333333337********************** PP

                  YABBY 141 kasnPdishreafsaaaknWahfPkihfgl 170
                            ka+nPdi+hreafsaaaknWahfP+ihfgl
  Traes_6DL_59DB06B9F.1 188 KAGNPDITHREAFSAAAKNWAHFPHIHFGL 217
                            ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.6E-6820217IPR006780YABBY protein
SuperFamilySSF470951.28E-7156210IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.9E-4166209IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MSSSSSSSAV FNLDHLAPSP TEQLCYVHCN CCDTILAVGV PCSSLFKTVT VRCGHCANLL  60
SVNLRALLLP PTAPPANQLQ FGHSLLSPTS PHGLLDEVAF QTPSLLMDQA STNLSGFTGR  120
SNSSCASNLP AMPMPAAKPA QQETEQSAKS APSANRRKDQ LFLSAPEKRQ RVPSAYNRFI  180
KDEIQRIKAG NPDITHREAF SAAAKNWAHF PHIHFGLMPD QGFKRTFKAQ DGAEDMLLKD  240
GLYAAAAAAA ANMSVTPL
Functional Description ? help Back to Top
Source Description
UniProtSeems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740161e-129AB274016.1 Oryza sativa Japonica Group OsYABBY4 mRNA for OsYABBY4 protein, complete cds.
GenBankAK1067841e-129AK106784.1 Oryza sativa Japonica Group cDNA clone:002-115-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155220.10.0protein YABBY 4-like isoform X1
SwissprotA2X7Q31e-124YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6681e-124YAB4_ORYSJ; Protein YABBY 4
TrEMBLA0A3B6QIL10.0A0A3B6QIL1_WHEAT; Uncharacterized protein
TrEMBLA0A453P6430.0A0A453P643_AEGTS; Uncharacterized protein
STRINGTraes_6DL_59DB06B9F.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-56YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]