PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_604AFCFEF.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 363aa    MW: 38857.8 Da    PI: 7.7041
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_604AFCFEF.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.42.3e-19280314135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            Cs+Cg+ kTp+WR gp+g ktLCnaCG+++++ +l
  Traes_6DL_604AFCFEF.1 280 CSHCGVQKTPQWRAGPEGAKTLCNACGVRFKSGRL 314
                            *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169929.0E-6735360IPR016679Transcription factor, GATA, plant
SMARTSM004012.0E-16274328IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.965274310IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-13275335No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14279312IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.6E-17280314IPR000679Zinc finger, GATA-type
CDDcd002026.75E-14280321No hitNo description
PROSITE patternPS003440280305IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MSSSFAHHHG SLQVERMSAL KSSLRPCEAA EEVAAAVVAG PAAWGAGLLG DGFSVEELLD  60
LEELCEVDKE GGFLCETAPA AEEDEKCSDS HGSSAVSYEL MPLIPQEMDL PAHDAEELEW  120
VSRIMDDSQA ELPPPQQLPA PAAWPPQHRR PQESAVPTVD PMRTPTICAL STEALVPVRS  180
KKRSKRSRGT TVWSLSGASI SDSASSSATS SSCSSSASLS SFFLMDSPTF NLLDEPPRPK  240
NKSKKSKHKA KKRGRKPKSH LPPQLSGGAA SPPAXXXXXC SHCGVQKTPQ WRAGPEGAKT  300
LCNACGVRFK SGRLLPEYRP ACSPTFVGNL HSNSHRKVLE MRRKKDPVPV VIEAATAPAV  360
ASF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659070.0AK365907.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038N10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199372.10.0GATA transcription factor 5-like
TrEMBLA0A3B6QIM40.0A0A3B6QIM4_WHEAT; GATA transcription factor
TrEMBLA0A453P6D70.0A0A453P6D7_AEGTS; GATA transcription factor
STRINGTraes_6DL_604AFCFEF.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-38GATA transcription factor 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]